hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01092821/chunk_1/iprscan-20080502-01092821.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1378 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00612 338.6 4e-97 6 SM00225 94.8 1e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00225 1/1 75 172 .. 1 114 [] 94.8 1e-23 SM00612 1/6 327 374 .. 1 55 [] 43.1 3.6e-08 SM00612 2/6 375 421 .. 1 55 [] 63.7 2.4e-14 SM00612 3/6 422 468 .. 1 55 [] 58.2 1.1e-12 SM00612 4/6 469 515 .. 1 55 [] 56.3 4e-12 SM00612 5/6 516 562 .. 1 55 [] 64.3 1.6e-14 SM00612 6/6 563 609 .. 1 55 [] 53.1 3.6e-11 Alignments of top-scoring domains: SM00225: domain 1 of 1, from 75 to 172: score 94.8, E = 1e-23 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. cDvtl vg k +++ Hk+vLa+ pyF+a+f+s+ KIAA1378 75 CDVTLKVGS---------KLISC--HKLVLACV---IPYFRAMFLSe 107 ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel + +++ ie+ D ++ +a + l++f Y+++l l+ + nv+ l KIAA1378 108 maeakqtlIEIRD------FDGDAIEDLVKFVYSsRLTLTVD---NVQPL 148 LelAdfldSYGqip.lvelCeefllknl<-* L++A l q++ ++++C+e+++ + KIAA1378 149 LYAACIL----QVElVARACCEYMKLHF 172 SM00612: domain 1 of 6, from 327 to 374: score 43.1, E = 3.6e-08 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg +++ vGG+ g +g+ ++s+E+Y+ n W +p M+++R + KIAA1378 327 VLFCVGGRGG-------SGDPFRSIECYSINKNSWFFGPEMNSRRRH 366 agvaving<-* +gv +++g KIAA1378 367 VGVISVEG 374 SM00612: domain 2 of 6, from 375 to 421: score 63.7, E = 2.4e-14 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg k+Y+vGG+dg +++l s E++Dp tnkW + +sM+t+R g KIAA1378 375 KVYAVGGHDG--------NEHLGSMEMFDPLTNKWMMKASMNTKRRG 413 agvaving<-* ++a+++g KIAA1378 414 IALASLGG 421 SM00612: domain 3 of 6, from 422 to 468: score 58.2, E = 1.1e-12 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg iY++GG d +++++ vE+YD e+++W+ v++M+tpR g KIAA1378 422 PIYAIGGLDD--------NTCFNDVERYDIESDQWSTVAPMNTPRGG 460 agvaving<-* +g++++ + KIAA1378 461 VGSVALVN 468 SM00612: domain 4 of 6, from 469 to 515: score 56.3, E = 4e-12 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++Y+vGG dg + +l+svE+YDp+ +kW +v M ++R+g KIAA1378 469 HVYAVGGNDG--------MASLSSVERYDPHLDKWIEVKEMGQRRAG 507 agvaving<-* gv ++g KIAA1378 508 NGVSKLHG 515 SM00612: domain 5 of 6, from 516 to 562: score 64.3, E = 1.6e-14 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++YvvGGfd ++ l+svE+YDp++nkW v+ ++tpR g KIAA1378 516 CLYVVGGFDD--------NSPLSSVERYDPRSNKWDYVAALTTPRGG 554 agvaving<-* +g+a++ g KIAA1378 555 VGIATVMG 562 SM00612: domain 6 of 6, from 563 to 609: score 53.1, E = 3.6e-11 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ki++vGG++g + +l++vE +Dp n W+ v s +++R+g KIAA1378 563 KIFAVGGHNG--------NAYLNTVEAFDPVLNRWELVGSVSHCRAG 601 agvaving<-* agvav+ KIAA1378 602 AGVAVCSC 609 //