hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01192931/chunk_1/iprscan-20080502-01192931.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1384 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 216.7 4.8e-62 6 PF01344.15.fs Kelch motif 211.7 1.5e-60 6 PF07646.5.ls Kelch motif 115.0 1.9e-31 6 PF07646.5.fs Kelch motif 103.7 5.1e-28 6 PF00651.21.ls BTB/POZ domain 101.8 1.8e-27 1 PF00651.21.fs BTB/POZ domain 99.5 2.9e-27 2 PF07707.5.fs BTB And C-terminal Kelch 30.1 1.7e-07 1 PF07707.5.ls BTB And C-terminal Kelch 27.0 6.8e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/2 47 90 .. 1 52 [. 60.6 2e-16 PF00651.21.ls 1/1 47 205 .. 1 135 [] 101.8 1.8e-27 PF00651.21.fs 2/2 138 205 .. 46 135 .] 38.9 2.3e-10 PF07707.5.ls 1/1 210 303 .. 1 103 [] 27.0 6.8e-06 PF07707.5.fs 1/1 238 303 .. 38 103 .] 30.1 1.7e-07 PF01344.15.ls 1/6 335 383 .. 1 45 [] 11.1 0.2 PF01344.15.ls 2/6 385 435 .. 1 45 [] 41.1 3.5e-09 PF01344.15.fs 2/6 385 435 .. 1 45 [] 39.1 2.8e-10 PF07646.5.fs 3/6 437 482 .. 1 54 [] 30.4 2.1e-07 PF01344.15.ls 3/6 437 482 .. 1 45 [] 59.4 1.1e-14 PF01344.15.fs 3/6 437 482 .. 1 45 [] 57.4 1.8e-15 PF07646.5.ls 3/6 437 482 .. 1 54 [] 32.2 1.7e-06 PF01344.15.ls 4/6 484 529 .. 1 45 [] 46.5 8.1e-11 PF01344.15.fs 4/6 484 529 .. 1 45 [] 44.5 8e-12 PF07646.5.ls 4/6 484 529 .. 1 54 [] 19.1 0.015 PF07646.5.fs 4/6 484 529 .. 1 54 [] 17.2 0.00082 PF01344.15.fs 5/6 531 580 .. 1 45 [] 24.5 4e-06 PF01344.15.ls 5/6 531 580 .. 1 45 [] 26.5 8.9e-05 PF07646.5.ls 5/6 531 580 .. 1 54 [] 15.5 0.18 PF01344.15.fs 6/6 583 626 .. 1 41 [. 32.7 1.8e-08 PF07646.5.ls 6/6 583 630 .. 1 54 [] 22.3 0.0016 PF07646.5.fs 6/6 583 630 .. 1 54 [] 20.4 0.00011 PF01344.15.ls 6/6 583 630 .. 1 45 [] 32.1 1.8e-06 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 2, from 47 to 90: score 60.6, E = 2e-16 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln l ++ +cDVtL ++ g++f++HKavLa+cS YF++l KIAA1384 47 LNLLWRKQLFCDVTLTAQ--------GQQFHCHKAVLASCSQYFRSL 85 Ftgqf<-* F++++ KIAA1384 86 FSSHP 90 PF00651.21.ls: domain 1 of 1, from 47 to 205: score 101.8, E = 1.8e-27 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln l ++ +cDVtL ++ g++f++HKavLa+cS YF++l KIAA1384 47 LNLLWRKQLFCDVTLTAQ--------GQQFHCHKAVLASCSQYFRSL 85 Ftgqfkes.......................................... F++++ +++ +++++ + +++++++++++++++++++++++++++++ KIAA1384 86 FSSHP--Plgggvggqdglgapkdqqqppqqqpsqqqqpppqeepgtpss 133 .....iteeessvsseieledvspedfealLefiYtgelsitqdqksPss +++++++ + + ++ + l++ s ++++Le++Yt+ ++++ KIAA1384 134 spddkLLTSPRAIN-NLVLQGCSSIGLRLVLEYLYTANVTLS-------- 174 ckseenvedlLaaAadllqipslvdaCeefliksl<-* +++ve++L+ + l+ip ++++C +fl ++ KIAA1384 175 ---LDTVEEVLSVS-KILHIPQVTKLCVQFLNDQI 205 PF00651.21.fs: domain 2 of 2, from 138 to 205: score 38.9, E = 2.3e-10 *->alFtgqfkesiteeessvsseieledvspedfealLefiYtgelsit +l+t+ ++ + l++ s ++++Le++Yt+ ++++ KIAA1384 138 KLLTSP-------RAIN---NLVLQGCSSIGLRLVLEYLYTANVTLS 174 qdqksPssckseenvedlLaaAadllqipslvdaCeefliksl<-* +++ve++L+ + l+ip ++++C +fl ++ KIAA1384 175 -----------LDTVEEVLSVS-KILHIPQVTKLCVQFLNDQI 205 PF07707.5.ls: domain 1 of 1, from 210 to 303: score 27.0, E = 6.8e-06 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie +++ +A +g+ee +++A++++ e+ l L +e+++ KIAA1384 210 YKQVCKIAALHGLEETKKLANKYLV---------EDVLLLNFEEMRA 247 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL s V+sE +f+ + W+ hd e+R +++p+L++ R++L++ + KIAA1384 248 LLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPE 297 Llevve<-* L+e+v+ KIAA1384 298 LVERVQ 303 PF07707.5.fs: domain 1 of 1, from 238 to 303: score 30.1, E = 1.7e-07 *->lqLskeqLielLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeL l L +e+++ lL s V+sE +f+ + W+ hd e+R +++p+L KIAA1384 238 LLLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDL 284 LshVRLpLLspkyLlevve<-* ++ R++L++ +L+e+v+ KIAA1384 285 MKRLRFALIPAPELVERVQ 303 PF01344.15.ls: domain 1 of 6, from 335 to 383: score 11.1, E = 0.2 *->pRsgagvvvldgkiYviGGydg....qslnsvevYDpetntWtklps + + + + +GG +++++ ++n v +YD e++tW++l+ KIAA1384 335 QSLASRIRSNKKMLLLVGGLPPgpdrLPSNLVQYYDDEKKTWKILTI 381 mp<-* mp KIAA1384 382 MP 383 PF01344.15.ls: domain 2 of 6, from 385 to 435: score 41.1, E = 3.5e-09 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl ++++vv +++ ++v GG d +++++ s+n v +YDp+ n+W +l KIAA1384 385 NSAHHCVVEVENFLFVLGGEDQwnpngkHSTNFVSRYDPRFNSWIQL 431 psmp<-* p+m+ KIAA1384 432 PPMQ 435 PF01344.15.fs: domain 2 of 6, from 385 to 435: score 39.1, E = 2.8e-10 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl ++++vv +++ ++v GG d +++++ s+n v +YDp+ n+W +l KIAA1384 385 NSAHHCVVEVENFLFVLGGEDQwnpngkHSTNFVSRYDPRFNSWIQL 431 psmp<-* p+m+ KIAA1384 432 PPMQ 435 PF07646.5.fs: domain 3 of 6, from 437 to 482: score 30.4, E = 2.1e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ ++ lyv+GG+ n ++s++ ++++etn+W KIAA1384 437 RRASFYACRLDKHLYVIGGR--------NETGYLSSVECYNLETNEW 475 eklpalp<-* +++++lp KIAA1384 476 RYVSSLP 482 PF01344.15.ls: domain 3 of 6, from 437 to 482: score 59.4, E = 1.1e-14 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++ ++ ld ++YviGG++ + +l+sve+Y++etn+W++++s+p KIAA1384 437 RRASFYACRLDKHLYVIGGRNEtGYLSSVECYNLETNEWRYVSSLP 482 -* KIAA1384 - - PF01344.15.fs: domain 3 of 6, from 437 to 482: score 57.4, E = 1.8e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++ ++ ld ++YviGG++ + +l+sve+Y++etn+W++++s+p KIAA1384 437 RRASFYACRLDKHLYVIGGRNEtGYLSSVECYNLETNEWRYVSSLP 482 -* KIAA1384 - - PF07646.5.ls: domain 3 of 6, from 437 to 482: score 32.2, E = 1.7e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ ++ lyv+GG+ n ++s++ ++++etn+W KIAA1384 437 RRASFYACRLDKHLYVIGGR--------NETGYLSSVECYNLETNEW 475 eklpalp<-* +++++lp KIAA1384 476 RYVSSLP 482 PF01344.15.ls: domain 4 of 6, from 484 to 529: score 46.5, E = 8.1e-11 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p + ++ +v++gkiY+ GG+ +++++ + ++YDp+ + W + +m+ KIAA1384 484 PLAAHAGAVHNGKIYISGGVHNgEYVPWLYCYDPVMDVWARKQDMN 529 -* KIAA1384 - - PF01344.15.fs: domain 4 of 6, from 484 to 529: score 44.5, E = 8e-12 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p + ++ +v++gkiY+ GG+ +++++ + ++YDp+ + W + +m+ KIAA1384 484 PLAAHAGAVHNGKIYISGGVHNgEYVPWLYCYDPVMDVWARKQDMN 529 -* KIAA1384 - - PF07646.5.ls: domain 4 of 6, from 484 to 529: score 19.1, E = 0.015 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p++ ha +v +gk+y++GG+ +++e+ l+++dp vW KIAA1384 484 PLAAHAGAVHNGKIYISGGV--------HNGEYVPWLYCYDPVMDVW 522 eklpalp<-* + +++ KIAA1384 523 ARKQDMN 529 PF07646.5.fs: domain 4 of 6, from 484 to 529: score 17.2, E = 0.00082 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p++ ha +v +gk+y++GG+ +++e+ l+++dp vW KIAA1384 484 PLAAHAGAVHNGKIYISGGV--------HNGEYVPWLYCYDPVMDVW 522 eklpalp<-* + +++ KIAA1384 523 ARKQDMN 529 PF01344.15.fs: domain 5 of 6, from 531 to 580: score 24.5, E = 4e-06 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp +R+ ++ +v+++++Y+iGG ++ ++ + ve+YDp+ ++W +l KIAA1384 531 KRAIHTLAVMNDRLYAIGGNHLkgfshLDVMLVECYDPKGDQWNILQ 577 smp<-* ++ KIAA1384 578 TPI 580 PF01344.15.ls: domain 5 of 6, from 531 to 580: score 26.5, E = 8.9e-05 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp +R+ ++ +v+++++Y+iGG ++ ++ + ve+YDp+ ++W +l KIAA1384 531 KRAIHTLAVMNDRLYAIGGNHLkgfshLDVMLVECYDPKGDQWNILQ 577 smp<-* ++ KIAA1384 578 TPI 580 PF07646.5.ls: domain 5 of 6, from 531 to 580: score 15.5, E = 0.18 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdll...vldpet r+ h+++v++++ly +GG ++++ s++d++ +++dp+ KIAA1384 531 KRAIHTLAVMNDRLYAIGGN-------HLKGFSHLDVMlveCYDPKG 570 nvWeklpalp<-* +W l+ + KIAA1384 571 DQWNILQTPI 580 PF01344.15.fs: domain 6 of 6, from 583 to 626: score 32.7, E = 1.8e-08 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtkl<-* Rsg g++vld+ iY +GGy+ + + + +s +Y pe++tWt+l KIAA1384 583 GRSGPGCAVLDDSIYLVGGYSWsmgAYKSSTICYCPEKGTWTEL 626 PF07646.5.ls: domain 6 of 6, from 583 to 630: score 22.3, E = 0.0016 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++v+++ +y+vGG+ + ++ + s+ ++ pe+ +W KIAA1384 583 GRSGPGCAVLDDSIYLVGGY------SWSMGAYKSSTICYCPEKGTW 623 eklpalp<-* ++l ++ KIAA1384 624 TELEGDV 630 PF07646.5.fs: domain 6 of 6, from 583 to 630: score 20.4, E = 0.00011 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++v+++ +y+vGG+ + ++ + s+ ++ pe+ +W KIAA1384 583 GRSGPGCAVLDDSIYLVGGY------SWSMGAYKSSTICYCPEKGTW 623 eklpalp<-* ++l ++ KIAA1384 624 TELEGDV 630 PF01344.15.ls: domain 6 of 6, from 583 to 630: score 32.1, E = 1.8e-06 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm Rsg g++vld+ iY +GGy+ + + + +s +Y pe++tWt+l KIAA1384 583 GRSGPGCAVLDDSIYLVGGYSWsmgAYKSSTICYCPEKGTWTELEGD 629 p<-* KIAA1384 630 V 630 //