hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01192931/chunk_1/iprscan-20080502-01192931.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1384 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00612 184.4 1.1e-50 6 SM00225 98.3 8.8e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00225 1/1 57 205 .. 1 114 [] 98.3 8.8e-25 SM00612 1/6 347 396 .. 1 55 [] 18.9 0.15 SM00612 2/6 397 448 .. 1 55 [] 23.3 0.035 SM00612 3/6 449 495 .. 1 55 [] 63.6 2.6e-14 SM00612 4/6 496 542 .. 1 55 [] 34.3 1.7e-05 SM00612 5/6 543 594 .. 1 55 [] 30.2 0.00028 SM00612 6/6 595 644 .. 1 55 [] 14.1 0.52 Alignments of top-scoring domains: SM00225: domain 1 of 1, from 57 to 205: score 98.3, E = 8.8e-25 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. cDvtl ++g ++fh+ HkavLa+c S yF++lf+s+ KIAA1384 57 CDVTLTAQG---------QQFHC--HKAVLASC---SQYFRSLFSSh 89 .................................................. ++ +++ +++++ + ++++++++++++++++++++++++++++++++++ KIAA1384 90 pplgggvggqdglgapkdqqqppqqqpsqqqqpppqeepgtpssspddkl 139 .........ieldDeallievspeaFralLnflYt.kldlpeedvenvee ++++ ++ l++ s +r++L++lYt + l+ + +vee KIAA1384 140 ltsprainnLVLQG------CSSIGLRLVLEYLYTaNVTLSLD---TVEE 180 lLelAdfldSYGqip.lvelCeefllknl<-* +L + l +ip++++lC +fl +++ KIAA1384 181 VLSVSKIL----HIPqVTKLCVQFLNDQI 205 SM00612: domain 1 of 6, from 347 to 396: score 18.9, E = 0.15 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg + vGG + ++ ++ v +YD e ++W++++ Mp+ ++ KIAA1384 347 MLLLVGGLPPGPD-----RLPSNLVQYYDDEKKTWKILTIMPYNSAH 388 agvaving<-* ++v+ +++ KIAA1384 389 HCVVEVEN 396 SM00612: domain 2 of 6, from 397 to 448: score 23.3, E = 0.035 *->kiYvvGG...fdgttrclpgegqrlksvEvYDpetnkWrpvpsMptp ++v GG+++++++ ++++++ v +YDp+ n W ++p+M+ + KIAA1384 397 FLFVLGGedqWNPN------GKHSTNFVSRYDPRFNSWIQLPPMQER 437 Rsgagvaving<-* R+ + ++ +++ KIAA1384 438 RASFYACRLDK 448 SM00612: domain 3 of 6, from 449 to 495: score 63.6, E = 2.6e-14 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg ++Yv+GG++ + +l+svE+Y++etn+Wr v s+p+p + KIAA1384 449 HLYVIGGRNE--------TGYLSSVECYNLETNEWRYVSSLPQPLAA 487 agvaving<-* ++ av+ng KIAA1384 488 HAGAVHNG 495 SM00612: domain 4 of 6, from 496 to 542: score 34.3, E = 1.7e-05 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg kiY+ GG ++ g+++ +YDp + W + +M+t+R+ KIAA1384 496 KIYISGGVHN--------GEYVPWLYCYDPVMDVWARKQDMNTKRAI 534 agvaving<-* + +av+n+ KIAA1384 535 HTLAVMND 542 SM00612: domain 5 of 6, from 543 to 594: score 30.2, E = 0.00028 *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvp.sMptpR ++Y++GG ++ l++ + + vE+YDp+ ++W ++ ++ +R KIAA1384 543 RLYAIGG-NH----LKgFSHLDVMLVECYDPKGDQWNILQtPILEGR 584 sgagvaving<-* sg g+av+++ KIAA1384 585 SGPGCAVLDD 594 SM00612: domain 6 of 6, from 595 to 644: score 14.1, E = 0.52 *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvp.sMptpRs iY vGG++ + g + +s+ +Y pe ++W+++ ++ p + KIAA1384 595 SIYLVGGYSWSM------GAYKSSTICYCPEKGTWTELEgDVAEPLA 635 gagvaving<-* g +++++ KIAA1384 636 GPACVTVIL 644 //