hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01260494/chunk_1/iprscan-20080502-01260494.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1388 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.fs Zinc finger, C2H2 type 358.9 7.8e-105 16 PF00096.16.ls Zinc finger, C2H2 type 351.8 1e-102 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 2/15 149 171 .. 1 24 [] 20.0 0.008 PF00096.16.ls 3/15 219 241 .. 1 24 [] 34.5 3.4e-07 PF00096.16.fs 4/16 219 241 .. 1 24 [] 32.5 7.4e-07 PF00096.16.ls 4/15 247 269 .. 1 24 [] 32.5 1.4e-06 PF00096.16.fs 5/16 247 269 .. 1 24 [] 30.5 2.3e-06 PF00096.16.ls 5/15 275 297 .. 1 24 [] 31.0 3.9e-06 PF00096.16.fs 6/16 275 297 .. 1 24 [] 29.0 5.6e-06 PF00096.16.ls 7/15 332 354 .. 1 24 [] 35.8 1.4e-07 PF00096.16.fs 8/16 332 354 .. 1 24 [] 33.8 3.6e-07 PF00096.16.ls 8/15 360 382 .. 1 24 [] 29.6 9.9e-06 PF00096.16.fs 9/16 360 382 .. 1 24 [] 27.7 1.2e-05 PF00096.16.ls 9/15 388 410 .. 1 24 [] 25.3 0.0002 PF00096.16.fs 10/16 388 410 .. 1 24 [] 23.3 0.00014 PF00096.16.ls 11/15 445 467 .. 1 24 [] 34.3 3.9e-07 PF00096.16.fs 12/16 445 467 .. 1 24 [] 32.3 8.3e-07 PF00096.16.fs 14/16 503 525 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 13/15 503 525 .. 1 24 [] 33.7 6.1e-07 PF00096.16.fs 15/16 531 553 .. 1 24 [] 32.1 9.2e-07 PF00096.16.ls 14/15 531 553 .. 1 24 [] 34.1 4.5e-07 Alignments of top-scoring domains: PF00096.16.ls: domain 2 of 15, from 149 to 171: score 20.0, E = 0.008 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C+ Fs +L +H +H KIAA1388 149 FVCG-VCKMGFSLLTSLAQHHSSH 171 PF00096.16.ls: domain 3 of 15, from 219 to 241: score 34.5, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C+k F++ s+L rH r+H KIAA1388 219 YSCP-ICQKPFKHLSELSRHERIH 241 PF00096.16.fs: domain 4 of 16, from 219 to 241: score 32.5, E = 7.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C+k F++ s+L rH r+H KIAA1388 219 YSCP-ICQKPFKHLSELSRHERIH 241 PF00096.16.ls: domain 4 of 15, from 247 to 269: score 32.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C+ksFs++s+L +H+rtH KIAA1388 247 YKCT-LCDKSFSQSSHLVHHKRTH 269 PF00096.16.fs: domain 5 of 16, from 247 to 269: score 30.5, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C+ksFs++s+L +H+rtH KIAA1388 247 YKCT-LCDKSFSQSSHLVHHKRTH 269 PF00096.16.ls: domain 5 of 15, from 275 to 297: score 31.0, E = 3.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C k+F+++s+L rH+ H KIAA1388 275 YKCA-VCEKTFKHRSHLVRHMYAH 297 PF00096.16.fs: domain 6 of 16, from 275 to 297: score 29.0, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C k+F+++s+L rH+ H KIAA1388 275 YKCA-VCEKTFKHRSHLVRHMYAH 297 PF00096.16.ls: domain 7 of 15, from 332 to 354: score 35.8, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C+k+F+r+s+L++H rtH KIAA1388 332 FRCG-ECQKAFKRPSDLRQHERTH 354 PF00096.16.fs: domain 8 of 16, from 332 to 354: score 33.8, E = 3.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C+k+F+r+s+L++H rtH KIAA1388 332 FRCG-ECQKAFKRPSDLRQHERTH 354 PF00096.16.ls: domain 8 of 15, from 360 to 382: score 29.6, E = 9.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C F++++ L rH+rtH KIAA1388 360 FKCD-LCPMGFKQQYALMRHRRTH 382 PF00096.16.fs: domain 9 of 16, from 360 to 382: score 27.7, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C F++++ L rH+rtH KIAA1388 360 FKCD-LCPMGFKQQYALMRHRRTH 382 PF00096.16.ls: domain 9 of 15, from 388 to 410: score 25.3, E = 0.0002 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC C k F ++s+L H+ +H KIAA1388 388 FKCG-LCEKGFGQPSHLLYHQHVH 410 PF00096.16.fs: domain 10 of 16, from 388 to 410: score 23.3, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC C k F ++s+L H+ +H KIAA1388 388 FKCG-LCEKGFGQPSHLLYHQHVH 410 PF00096.16.ls: domain 11 of 15, from 445 to 467: score 34.3, E = 3.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C+k+++r s L++H+ H KIAA1388 445 FKCP-VCNKAYKRASALQKHQLAH 467 PF00096.16.fs: domain 12 of 16, from 445 to 467: score 32.3, E = 8.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C+k+++r s L++H+ H KIAA1388 445 FKCP-VCNKAYKRASALQKHQLAH 467 PF00096.16.fs: domain 14 of 16, from 503 to 525: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* kCp dC k+F+ s+L+rH+r+H KIAA1388 503 LKCP-DCEKRFKYASDLQRHRRVH 525 PF00096.16.ls: domain 13 of 15, from 503 to 525: score 33.7, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* kCp dC k+F+ s+L+rH+r+H KIAA1388 503 LKCP-DCEKRFKYASDLQRHRRVH 525 PF00096.16.fs: domain 15 of 16, from 531 to 553: score 32.1, E = 9.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp C+k+F+++++L++H+ +H KIAA1388 531 YKCP-NCDKAFKQREHLNKHQGVH 553 PF00096.16.ls: domain 14 of 15, from 531 to 553: score 34.1, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp C+k+F+++++L++H+ +H KIAA1388 531 YKCP-NCDKAFKQREHLNKHQGVH 553 //