hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01260494/chunk_1/iprscan-20080502-01260494.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1388 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 309.8 1.9e-88 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/14 121 141 .. 1 23 [] 4.9 89 SM00355 2/14 149 171 .. 1 23 [] 18.4 1 SM00355 3/14 219 241 .. 1 23 [] 28.6 0.00088 SM00355 4/14 247 269 .. 1 23 [] 27.6 0.0018 SM00355 5/14 275 297 .. 1 23 [] 28.0 0.0013 SM00355 6/14 332 354 .. 1 23 [] 28.8 0.00076 SM00355 7/14 360 382 .. 1 23 [] 27.9 0.0014 SM00355 8/14 388 410 .. 1 23 [] 21.7 0.1 SM00355 9/14 416 436 .. 1 23 [] 8.8 32 SM00355 10/14 445 467 .. 1 23 [] 29.4 0.0005 SM00355 11/14 475 495 .. 1 23 [] 2.9 1.5e+02 SM00355 12/14 503 525 .. 1 23 [] 30.0 0.00032 SM00355 13/14 531 553 .. 1 23 [] 30.2 0.00029 SM00355 14/14 559 581 .. 1 23 [] 22.8 0.048 Alignments of top-scoring domains: SM00355: domain 1 of 14, from 121 to 141: score 4.9, E = 89 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C k f+++++L +H+ KIAA1388 121 FQCTQ-CLKIFHQAtDLLEHQC-- 141 SM00355: domain 2 of 14, from 149 to 171: score 18.4, E = 1 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + C++ fs ++L +H +H KIAA1388 149 FVCGV-CKMGFSLLtSLAQHHSSH 171 SM00355: domain 3 of 14, from 219 to 241: score 28.6, E = 0.00088 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cpi C+k f++ ++L rH r+H KIAA1388 219 YSCPI-CQKPFKHLsELSRHERIH 241 SM00355: domain 4 of 14, from 247 to 269: score 27.6, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+ksfs+ ++L++H r+H KIAA1388 247 YKCTL-CDKSFSQSsHLVHHKRTH 269 SM00355: domain 5 of 14, from 275 to 297: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + C k+f+++++L+rHm+ H KIAA1388 275 YKCAV-CEKTFKHRsHLVRHMYAH 297 SM00355: domain 6 of 14, from 332 to 354: score 28.8, E = 0.00076 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + C+k f+++++L++H r+H KIAA1388 332 FRCGE-CQKAFKRPsDLRQHERTH 354 SM00355: domain 7 of 14, from 360 to 382: score 27.9, E = 0.0014 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ f+++ aL rH r+H KIAA1388 360 FKCDL-CPMGFKQQyALMRHRRTH 382 SM00355: domain 8 of 14, from 388 to 410: score 21.7, E = 0.1 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + C k f ++++L H+ vH KIAA1388 388 FKCGL-CEKGFGQPsHLLYHQHVH 410 SM00355: domain 9 of 14, from 416 to 436: score 8.8, E = 32 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ C+k f + +L rH KIAA1388 416 FKCPV-CQKGFDQSaELLRHKC-- 436 SM00355: domain 10 of 14, from 445 to 467: score 29.4, E = 0.0005 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ C+k +++++aL++H+ H KIAA1388 445 FKCPV-CNKAYKRAsALQKHQLAH 467 SM00355: domain 11 of 14, from 475 to 495: score 2.9, E = 1.5e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C ++f s +++++H KIAA1388 475 LRCTL-CERRFFSSsEFVQHRC-- 495 SM00355: domain 12 of 14, from 503 to 525: score 30.0, E = 0.00032 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp C k+f+ +++L+rH rvH KIAA1388 503 LKCPD-CEKRFKYAsDLQRHRRVH 525 SM00355: domain 13 of 14, from 531 to 553: score 30.2, E = 0.00029 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp C+k f+++++L++H+ vH KIAA1388 531 YKCPN-CDKAFKQReHLNKHQGVH 553 SM00355: domain 14 of 14, from 559 to 581: score 22.8, E = 0.048 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cg++f + L++H +H KIAA1388 559 FKCVW-CGERFLDVaLLQEHSAQH 581 //