hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01274215/chunk_1/iprscan-20080502-01274215.nocrc
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Query sequence: KIAA1389
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02145.6.fs Rap/ran-GAP                                    432.1   1.3e-130   1
PF02145.6.ls Rap/ran-GAP                                    434.0   1.9e-127   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          32.6    1.7e-08   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          34.5    3.5e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02145.6.fs   1/1     416   604 ..     1   192 []   432.1 1.3e-130
PF02145.6.ls   1/1     416   604 ..     1   192 []   434.0 1.9e-127
PF00595.14.fs   1/1     742   814 ..     1    86 []    32.6  1.7e-08
PF00595.14.ls   1/1     742   814 ..     1    86 []    34.5  3.5e-07

Alignments of top-scoring domains:
PF02145.6.fs: domain 1 of 1, from 416 to 604: score 432.1, E = 1.3e-130
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Ne a+paF+eFL+lLGqrvrLK+f +   Yr++LD k+d+TGth
    KIAA1389   416    MYNNETAGPAFEEFLDLLGQRVRLKGFSK---YRAQLDNKTDSTGTH 459  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yttykd+e mFHVSTlLPy ++++qqL+rKRHIGNDiVtIVFqe+G++
    KIAA1389   460 SLYTTYKDYELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGAL 509  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF p+ IrShFqhVfviV++++p+te+v+Y+V v+r+kDvp fgp++pkg
    KIAA1389   510 PFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKG 559  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   ++f+k+a+Fr+flLak+iNaena+hk++kF+++atrtRq++L+dL   
    KIAA1389   560 VTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDL    604  

PF02145.6.ls: domain 1 of 1, from 416 to 604: score 434.0, E = 1.9e-127
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Ne a+paF+eFL+lLGqrvrLK+f +   Yr++LD k+d+TGth
    KIAA1389   416    MYNNETAGPAFEEFLDLLGQRVRLKGFSK---YRAQLDNKTDSTGTH 459  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yttykd+e mFHVSTlLPy ++++qqL+rKRHIGNDiVtIVFqe+G++
    KIAA1389   460 SLYTTYKDYELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGAL 509  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF p+ IrShFqhVfviV++++p+te+v+Y+V v+r+kDvp fgp++pkg
    KIAA1389   510 PFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKG 559  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   ++f+k+a+Fr+flLak+iNaena+hk++kF+++atrtRq++L+dL   
    KIAA1389   560 VTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDL    604  

PF00595.14.fs: domain 1 of 1, from 742 to 814: score 32.6, E = 1.7e-08
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e+tl ++ + g lGf +          +++v++v p  g A ++G L
    KIAA1389   742    EMTLRRN-GLGQLGFHVNF--------EGIVADVEPF-GFAWKAG-L 777  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + G ++++++ + ++ l+he+ +++l+ s+  +v+++++   
    KIAA1389   778 RQGSRLVEICKVAVATLTHEQMIDLLRTSV--TVKVVII    814  

PF00595.14.ls: domain 1 of 1, from 742 to 814: score 34.5, E = 3.5e-07
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e+tl ++ + g lGf +          +++v++v p  g A ++G L
    KIAA1389   742    EMTLRRN-GLGQLGFHVNF--------EGIVADVEPF-GFAWKAG-L 777  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + G ++++++ + ++ l+he+ +++l+ s+  +v+++++   
    KIAA1389   778 RQGSRLVEICKVAVATLTHEQMIDLLRTSV--TVKVVII    814  

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