hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01391629/chunk_1/iprscan-20080502-01391629.nocrc
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Query sequence: KIAA1396
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00096.16.ls Zinc finger, C2H2 type 461.1 1.3e-135 15
PF00096.16.fs Zinc finger, C2H2 type 431.5 1e-126 15
PF01096.9.fs Transcription factor S-II (TFIIS) 72.5 9.5e-22 15
PF01286.9.fs XPA protein N-terminal 62.8 3.8e-17 13
PF08790.1.fs LYAR-type C2HC zinc finger 26.5 7.2e-07 5
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00096.16.fs 1/15 131 153 .. 1 24 [] 31.1 1.7e-06
PF00096.16.ls 1/15 131 153 .. 1 24 [] 33.1 9.3e-07
PF00096.16.ls 2/15 159 181 .. 1 24 [] 32.6 1.3e-06
PF00096.16.fs 2/15 159 181 .. 1 24 [] 30.6 2.2e-06
PF00096.16.ls 3/15 187 209 .. 1 24 [] 32.7 1.2e-06
PF00096.16.fs 3/15 187 209 .. 1 24 [] 30.7 2.1e-06
PF00096.16.ls 4/15 215 237 .. 1 24 [] 34.4 3.7e-07
PF00096.16.fs 4/15 215 237 .. 1 24 [] 32.4 7.9e-07
PF00096.16.ls 5/15 243 265 .. 1 24 [] 27.4 4.6e-05
PF00096.16.fs 5/15 243 265 .. 1 24 [] 25.5 4.2e-05
PF00096.16.fs 6/15 271 294 .. 1 24 [] 24.1 9.3e-05
PF00096.16.ls 6/15 271 294 .. 1 24 [] 26.1 0.00012
PF00096.16.ls 7/15 300 322 .. 1 24 [] 20.4 0.0058
PF00096.16.ls 8/15 328 350 .. 1 24 [] 31.0 3.9e-06
PF00096.16.fs 8/15 328 350 .. 1 24 [] 29.0 5.6e-06
PF00096.16.ls 9/15 356 378 .. 1 24 [] 34.4 3.7e-07
PF00096.16.fs 9/15 356 378 .. 1 24 [] 32.4 7.8e-07
PF00096.16.ls 10/15 384 406 .. 1 24 [] 35.4 1.8e-07
PF00096.16.fs 10/15 384 406 .. 1 24 [] 33.5 4.4e-07
PF00096.16.ls 11/15 412 434 .. 1 24 [] 34.4 3.7e-07
PF00096.16.fs 11/15 412 434 .. 1 24 [] 32.4 7.9e-07
PF00096.16.ls 12/15 440 462 .. 1 24 [] 27.9 3.4e-05
PF00096.16.fs 12/15 440 462 .. 1 24 [] 25.9 3.3e-05
PF00096.16.ls 13/15 468 490 .. 1 24 [] 34.6 3.2e-07
PF00096.16.fs 13/15 468 490 .. 1 24 [] 32.6 6.9e-07
PF00096.16.fs 14/15 496 518 .. 1 24 [] 26.4 2.5e-05
PF00096.16.ls 14/15 496 518 .. 1 24 [] 28.4 2.4e-05
PF00096.16.fs 15/15 524 546 .. 1 24 [] 26.4 2.5e-05
PF00096.16.ls 15/15 524 546 .. 1 24 [] 28.4 2.4e-05
Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 15, from 131 to 153: score 31.1, E = 1.7e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ +C+k+F+++s+L+ H r+H
KIAA1396 131 FKCN-ECDKTFTHSSSLTVHFRIH 153
PF00096.16.ls: domain 1 of 15, from 131 to 153: score 33.1, E = 9.3e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ +C+k+F+++s+L+ H r+H
KIAA1396 131 FKCN-ECDKTFTHSSSLTVHFRIH 153
PF00096.16.ls: domain 2 of 15, from 159 to 181: score 32.6, E = 1.3e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y C+ +Cgk+F+++ +L +H rtH
KIAA1396 159 YACE-ECGKAFKQRQHLAQHHRTH 181
PF00096.16.fs: domain 2 of 15, from 159 to 181: score 30.6, E = 2.2e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y C+ +Cgk+F+++ +L +H rtH
KIAA1396 159 YACE-ECGKAFKQRQHLAQHHRTH 181
PF00096.16.ls: domain 3 of 15, from 187 to 209: score 32.7, E = 1.2e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C+ +C k+F+++++L +H+r+H
KIAA1396 187 FECK-ECRKAFKQSEHLIQHQRIH 209
PF00096.16.fs: domain 3 of 15, from 187 to 209: score 30.7, E = 2.1e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C+ +C k+F+++++L +H+r+H
KIAA1396 187 FECK-ECRKAFKQSEHLIQHQRIH 209
PF00096.16.ls: domain 4 of 15, from 215 to 237: score 34.4, E = 3.7e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +C k+F+++++L +H+r+H
KIAA1396 215 YKCK-ECRKAFRQPAHLAQHQRIH 237
PF00096.16.fs: domain 4 of 15, from 215 to 237: score 32.4, E = 7.9e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +C k+F+++++L +H+r+H
KIAA1396 215 YKCK-ECRKAFRQPAHLAQHQRIH 237
PF00096.16.ls: domain 5 of 15, from 243 to 265: score 27.4, E = 4.6e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+Fs+ s++ rH+r H
KIAA1396 243 YECK-ECGKAFSDGSSFARHQRCH 265
PF00096.16.fs: domain 5 of 15, from 243 to 265: score 25.5, E = 4.2e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+Fs+ s++ rH+r H
KIAA1396 243 YECK-ECGKAFSDGSSFARHQRCH 265
PF00096.16.fs: domain 6 of 15, from 271 to 294: score 24.1, E = 9.3e-05
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
y+C +Cgk+F+ + ++ rH+r+ H
KIAA1396 271 YECI-ECGKAFRYNTSFIRHWRSyH 294
PF00096.16.ls: domain 6 of 15, from 271 to 294: score 26.1, E = 0.00012
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
y+C +Cgk+F+ + ++ rH+r+ H
KIAA1396 271 YECI-ECGKAFRYNTSFIRHWRSyH 294
PF00096.16.ls: domain 7 of 15, from 300 to 322: score 20.4, E = 0.0058
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+ C dCgk+Fs + L H+r+H
KIAA1396 300 FNCI-DCGKAFSVHIGLILHRRIH 322
PF00096.16.ls: domain 8 of 15, from 328 to 350: score 31.0, E = 3.9e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +Cgk+Fs+ s+ + H+r+H
KIAA1396 328 YKCD-VCGKTFSSGSSRTVHQRIH 350
PF00096.16.fs: domain 8 of 15, from 328 to 350: score 29.0, E = 5.6e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +Cgk+Fs+ s+ + H+r+H
KIAA1396 328 YKCD-VCGKTFSSGSSRTVHQRIH 350
PF00096.16.ls: domain 9 of 15, from 356 to 378: score 34.4, E = 3.7e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk Fs++++L++H+r+H
KIAA1396 356 YECD-ICGKDFSHHASLTQHQRVH 378
PF00096.16.fs: domain 9 of 15, from 356 to 378: score 32.4, E = 7.8e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk Fs++++L++H+r+H
KIAA1396 356 YECD-ICGKDFSHHASLTQHQRVH 378
PF00096.16.ls: domain 10 of 15, from 384 to 406: score 35.4, E = 1.8e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+F+++ +L +Hlr+H
KIAA1396 384 YECK-ECGKAFRQNVHLVSHLRIH 406
PF00096.16.fs: domain 10 of 15, from 384 to 406: score 33.5, E = 4.4e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+F+++ +L +Hlr+H
KIAA1396 384 YECK-ECGKAFRQNVHLVSHLRIH 406
PF00096.16.ls: domain 11 of 15, from 412 to 434: score 34.4, E = 3.7e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+F+ +s+L +H+r+H
KIAA1396 412 YECK-ECGKAFRISSQLATHQRIH 434
PF00096.16.fs: domain 11 of 15, from 412 to 434: score 32.4, E = 7.9e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+F+ +s+L +H+r+H
KIAA1396 412 YECK-ECGKAFRISSQLATHQRIH 434
PF00096.16.ls: domain 12 of 15, from 440 to 462: score 27.9, E = 3.4e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C +Cg +F+++s+L +H++tH
KIAA1396 440 YECI-ECGNAFKQRSHLAQHQKTH 462
PF00096.16.fs: domain 12 of 15, from 440 to 462: score 25.9, E = 3.3e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C +Cg +F+++s+L +H++tH
KIAA1396 440 YECI-ECGNAFKQRSHLAQHQKTH 462
PF00096.16.ls: domain 13 of 15, from 468 to 490: score 34.6, E = 3.2e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+Fs+ nL++H+r+H
KIAA1396 468 YECN-ECGKAFSQTCNLTQHQRIH 490
PF00096.16.fs: domain 13 of 15, from 468 to 490: score 32.6, E = 6.9e-07
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cgk+Fs+ nL++H+r+H
KIAA1396 468 YECN-ECGKAFSQTCNLTQHQRIH 490
PF00096.16.fs: domain 14 of 15, from 496 to 518: score 26.4, E = 2.5e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +Cgk+Fs++s+ +H+r H
KIAA1396 496 YKCT-ECGKAFSDSSSCAQHQRLH 518
PF00096.16.ls: domain 14 of 15, from 496 to 518: score 28.4, E = 2.4e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ +Cgk+Fs++s+ +H+r H
KIAA1396 496 YKCT-ECGKAFSDSSSCAQHQRLH 518
PF00096.16.fs: domain 15 of 15, from 524 to 546: score 26.4, E = 2.5e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C +Cgk+F+rk +L H+r+H
KIAA1396 524 YQCF-ECGKAFRRKLSLICHQRSH 546
PF00096.16.ls: domain 15 of 15, from 524 to 546: score 28.4, E = 2.4e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C +Cgk+F+rk +L H+r+H
KIAA1396 524 YQCF-ECGKAFRRKLSLICHQRSH 546
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