hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01423141/chunk_1/iprscan-20080502-01423141.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1398 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05104.3.ls Ribosome receptor lysine/proline rich 374.6 1.4e-109 1 PF05104.3.fs Ribosome receptor lysine/proline rich 372.6 5.6e-109 1 PF03305.4.fs Mycoplasma MG185/MG260 protein 317.1 3e-92 21 PF01469.9.ls Pentapeptide repeats (8 copies) 37.2 5.2e-08 9 PF01469.9.fs Pentapeptide repeats (8 copies) 25.0 3e-06 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05104.3.ls 1/1 59 202 .. 1 144 [] 374.6 1.4e-109 PF05104.3.fs 1/1 59 202 .. 1 144 [] 372.6 5.6e-109 PF01469.9.ls 1/9 257 296 .. 1 40 [] 0.5 0.3 PF01469.9.ls 2/9 327 366 .. 1 40 [] 6.2 0.078 PF01469.9.fs 1/8 330 366 .. 4 40 .] 5.5 0.89 PF01469.9.ls 3/9 367 406 .. 1 40 [] 5.1 0.099 PF01469.9.fs 2/8 368 406 .. 1 40 [] 3.6 3 PF01469.9.ls 4/9 427 466 .. 1 40 [] 5.1 0.099 PF01469.9.fs 3/8 428 466 .. 1 40 [] 3.6 3 PF01469.9.ls 5/9 477 516 .. 1 40 [] 3.1 0.16 PF01469.9.fs 4/8 478 516 .. 1 40 [] 1.6 11 PF01469.9.ls 6/9 537 576 .. 1 40 [] 4.0 0.13 PF01469.9.fs 5/8 538 576 .. 1 40 [] 2.4 6.5 PF01469.9.ls 7/9 577 616 .. 1 40 [] 5.0 0.1 PF01469.9.fs 6/8 578 616 .. 1 40 [] 3.4 3.4 PF01469.9.ls 8/9 617 656 .. 1 40 [] 3.6 0.14 PF01469.9.fs 7/8 618 656 .. 1 40 [] 2.0 8.1 PF01469.9.ls 9/9 657 696 .. 1 40 [] 4.6 0.11 PF01469.9.fs 8/8 658 696 .. 1 40 [] 3.1 4.2 Alignments of top-scoring domains: PF05104.3.ls: domain 1 of 1, from 59 to 202: score 374.6, E = 1.4e-109 *->mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP KIAA1398 59 MKETSYEEALANQRKEMAKTHHQKVEKKKKEKTVEKKGKTKKKEEKP 105 nGKiPeHDldPnvtvlLkEPvRvsAvAvAPtsvqssvivaPvAtvPAmPq nGKiP+HD++PnvtvlL+EPvR++AvAvAPt+vq+++ivaPvAtvPAmPq KIAA1398 106 NGKIPDHDPAPNVTVLLREPVRAPAVAVAPTPVQPPIIVAPVATVPAMPQ 155 EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvLasKaAiLEaaPKE<-* EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvL+sKaAiLE+aPKE KIAA1398 156 EKLASSPKDKKKKEKKVAKVEPAVSSVVNSIQVLTSKAAILETAPKE 202 PF05104.3.fs: domain 1 of 1, from 59 to 202: score 372.6, E = 5.6e-109 *->mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP KIAA1398 59 MKETSYEEALANQRKEMAKTHHQKVEKKKKEKTVEKKGKTKKKEEKP 105 nGKiPeHDldPnvtvlLkEPvRvsAvAvAPtsvqssvivaPvAtvPAmPq nGKiP+HD++PnvtvlL+EPvR++AvAvAPt+vq+++ivaPvAtvPAmPq KIAA1398 106 NGKIPDHDPAPNVTVLLREPVRAPAVAVAPTPVQPPIIVAPVATVPAMPQ 155 EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvLasKaAiLEaaPKE<-* EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvL+sKaAiLE+aPKE KIAA1398 156 EKLASSPKDKKKKEKKVAKVEPAVSSVVNSIQVLTSKAAILETAPKE 202 PF01469.9.ls: domain 1 of 9, from 257 to 296: score 0.5, E = 0.3 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G N G G N G KIAA1398 257 KTEGTPNQGKKAEGTPNQGKKAEGTPNQGKKAEGAQNQGK 296 PF01469.9.ls: domain 2 of 9, from 327 to 366: score 6.2, E = 0.078 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G + G +N G G N G KIAA1398 327 KVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGK 366 PF01469.9.fs: domain 1 of 8, from 330 to 366: score 5.5, E = 0.89 *->GslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G + G +N G G N G KIAA1398 330 GAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGK 366 PF01469.9.ls: domain 3 of 9, from 367 to 406: score 5.1, E = 0.099 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 367 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 406 PF01469.9.fs: domain 2 of 8, from 368 to 406: score 3.6, E = 3 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 368 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 406 PF01469.9.ls: domain 4 of 9, from 427 to 466: score 5.1, E = 0.099 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 427 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 466 PF01469.9.fs: domain 3 of 8, from 428 to 466: score 3.6, E = 3 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 428 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 466 PF01469.9.ls: domain 5 of 9, from 477 to 516: score 3.1, E = 0.16 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 477 KAEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGAPNQGK 516 PF01469.9.fs: domain 4 of 8, from 478 to 516: score 1.6, E = 11 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 478 -AEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGAPNQGK 516 PF01469.9.ls: domain 6 of 9, from 537 to 576: score 4.0, E = 0.13 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 537 KAEGTPNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGK 576 PF01469.9.fs: domain 5 of 8, from 538 to 576: score 2.4, E = 6.5 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 538 -AEGTPNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGK 576 PF01469.9.ls: domain 7 of 9, from 577 to 616: score 5.0, E = 0.1 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 577 KAEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 616 PF01469.9.fs: domain 6 of 8, from 578 to 616: score 3.4, E = 3.4 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 578 -AEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 616 PF01469.9.ls: domain 8 of 9, from 617 to 656: score 3.6, E = 0.14 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 617 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGK 656 PF01469.9.fs: domain 7 of 8, from 618 to 656: score 2.0, E = 8.1 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 618 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGK 656 PF01469.9.ls: domain 9 of 9, from 657 to 696: score 4.6, E = 0.11 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 657 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGK 696 PF01469.9.fs: domain 8 of 8, from 658 to 696: score 3.1, E = 4.2 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G KIAA1398 658 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGK 696 //