hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01455523/chunk_1/iprscan-20080502-01455523.nocrc
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Query sequence: KIAA1400
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 449.0   2.3e-130   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      87   173 ..     1   121 []    24.7    0.009
SM00112    2/6     197   301 ..     1   121 []    54.5  1.4e-11
SM00112    3/6     325   409 ..     1   121 []    99.5  3.9e-25
SM00112    4/6     433   514 ..     1   121 []   100.1  2.6e-25
SM00112    5/6     538   625 ..     1   121 []    98.8  6.4e-25
SM00112    6/6     656   739 ..     1   121 []    71.5  1.1e-16

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 87 to 173: score 24.7, E = 0.009
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v  + +D g   +  k      ++ +  ++ +++++++ +++ etG 
    KIAA1400    87    VGNIAEDLG--LDITK------LSARGFQtvpnsrtpYLDLNLETG- 124  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                             ++++++ +DRE+++++      ++  L  e+   +     
    KIAA1400   125 ----------VLYVNEKIDREQICKQS-----PSCVLHLEVFLEN----- 154  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                     +v ++VlD+NDN+P   
    KIAA1400   155 -------------PLELFQVEIEVLDINDNPP    173  

SM00112: domain 2 of 6, from 197 to 301: score 54.5, E = 1.4e-11
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                       sA D+D g   +N+         Y+i+++++Fs+d +t   g    
    KIAA1400   197    ESAFDPDVG---TNSL------RDYEITPnsYFSLDVQTQGDGNR-- 232  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt.
                     + ++++ kpLDRE+q         ++++ + +A+DgGg  +      +
    KIAA1400   233 --FAELVLEKPLDREQQ---------AVHRYVLTAVDGGGGGG-----Vg 266  

                   ............rksqqtpplsstatvtvtVlDvNDNaP<-*
                   ++++++++ + ++    ++++++ta +t++VlD NDN P   
    KIAA1400   267 egggggggaglpP----QQQRTGTALLTIRVLDSNDNVP    301  

SM00112: domain 3 of 6, from 325 to 409: score 99.5, E = 3.9e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++AtD+D+g   +Ng+      v+Ys++s+ +++ ++lF + p+tG 
    KIAA1400   325    LNATDPDEG---QNGE------VVYSFSShisprareLFGLSPRTG- 361  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              + ++++LD+Ee          ++Y++ v+A+D G++   
    KIAA1400   362 ----------RLEVSGELDYEES---------PVYQVYVQAKDLGPNA-- 390  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  +++ v v+VlD NDNaP   
    KIAA1400   391 -------------VPAHCKVLVRVLDANDNAP    409  

SM00112: domain 4 of 6, from 433 to 514: score 100.1, E = 2.6e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +s+tD+Ds+   eNg+      v +++l++ +F++ ++  +      
    KIAA1400   433    FSVTDRDSE---ENGQ------VQCELLGdvPFRLKSSFKN------ 464  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     +++i+t +pLDRE++         ++YtLtv+A+D+G+p         
    KIAA1400   465 --YYTIVTEAPLDREAG---------DSYTLTVVARDRGEPA-------- 495  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls++ +++v+V DvNDNaP   
    KIAA1400   496 -------LSTSKSIQVQVSDVNDNAP    514  

SM00112: domain 5 of 6, from 538 to 625: score 98.8, E = 6.4e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsAtD+D+g    N++      + Ysil+ + ++ +  ++ sI++e+
    KIAA1400   538    VSATDRDEG---ANAQ------LAYSILEcqiqgmsvftYVSINSEN 575  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            +++++++D+E+          + ++++veA+D+G+p+
    KIAA1400   576 G-----------YLYALRSFDYEQL---------KDFSFQVEARDAGSPQ 605  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                   +              l ++atv++ ++D+NDNaP   
    KIAA1400   606 A--------------LAGNATVNILIVDQNDNAP    625  

SM00112: domain 6 of 6, from 656 to 739: score 71.5, E = 1.1e-16
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v A+DaD+g   eN++      +tYsi+++++ +lF++d +tG    
    KIAA1400   656    VAAVDADDG---ENAR------LTYSIVRgnemnLFRMDWRTG---- 689  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                        e+ +  + p  R+ q           Y+L++e++D+G+pp     
    KIAA1400   690 -----ELRTARRVPAKRDPQ---------RPYELVIEVRDHGQPP----- 720  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             lsstat++v+++D    +    
    KIAA1400   721 ----------LSSTATLVVQLVDGAVEPQ    739  

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