HUGE

Gene/Protein Characteristic Table for KIAA1402

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00227
Accession No. :	AB037823
Description :	Chondroitin sulfate glucuronyltransferase.
HUGO Gene Name :
Clone Name :	hk09846 [Vector Info]
Flexi ORF Clone :	pF1KA1402
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 3970 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 138 bp

Genome contig ID gi89161213f_150460518
PolyA signal sequence
(ATTAAA,-19)
+----*----+----*----+----*----+----
TAAATATGAAAATGTTATTAAACATGTCTTCTGCC
Flanking genome sequence
(106322 - 106371)
----+----*----+----*----+----*----+----*----+----*
AAACTGTTTTTAGGTCTAGGGAAAATTGAGTAAGGAGAAGAATCCAAGGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 f 150560518 150566838 4 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 788 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9P2E5	100.0	Chondroitin sul...	Homo sapiens
XP_001140842	99.6	chondroitin sul...	Pan troglodytes
XP_001104211	99.5	similar to chon...	Macaca mulatta
XP_001504714	97.9	similar to chon...	Equus caballus
XP_539923	96.7	similar to chon...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB023207	4.3e-14	25.2	KIAA0990

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR008428 258 775 PF05679 Chondroitin N-acetylgalactosaminyltransferase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR008428	258	775	PF05679	Chondroitin N-acetylgalactosaminyltransferase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 23 LALLRPALPLILGLSLGCSLSLL 45 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	23	LALLRPALPLILGLSLGCSLSLL	45	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGCAGGCCAATAGCACTTAGC

Primer_r
: TCTATCTGTCCACCATCTTGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	138 bp
Genome contig ID	gi89161213f_150460518
PolyA signal sequence (ATTAAA,-19)	+--------+--------+----*----+---- TAAATATGAAAATGTTATTAAACATGTCTTCTGCC
Flanking genome sequence (106322 - 106371)	----+--------+--------+--------+--------+----* AAACTGTTTTTAGGTCTAGGGAAAATTGAGTAAGGAGAAGAATCCAAGGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	f	150560518	150566838	4	100.0	Perfect prediction

Primer_f	: AGCAGGCCAATAGCACTTAGC
Primer_r	: TCTATCTGTCCACCATCTTGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1402

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information