hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01490958/chunk_1/iprscan-20080502-01490958.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1402 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05679.6.ls Chondroitin N-acetylgalactosaminyltransferas 932.6 1.6e-277 1 PF05679.6.fs Chondroitin N-acetylgalactosaminyltransferas 930.9 4.7e-277 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05679.6.fs 1/1 258 775 .. 1 684 [] 930.9 4.7e-277 PF05679.6.ls 1/1 258 775 .. 1 684 [] 932.6 1.6e-277 Alignments of top-scoring domains: PF05679.6.fs: domain 1 of 1, from 258 to 775: score 930.9, E = 4.7e-277 *->hlekClrdmltadeDvlelGRCvrdatGvgClgthegvqyyemqsle hl++C++d+l+a++D+ +lGRC++d +GvgC+++h+g+qy +s+e KIAA1402 258 HLDGCRGDILSARPDE-WLGRCLIDSLGVGCVSQHQGQQY---RSFE 300 lsnseaekesyierlkepafksAltvhPvknpadmyrLHkyflrlelera l+++++++++ ++af sA++vhPv ++++myrLHk+f++lelera KIAA1402 301 LAKNRDPEKE-----GSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERA 345 reeiiqLeaeisrlAeysasegirkisWplgiPpSFmpstPnnRyevltW ++ei+qL+a+i++l +++++eg++++sWp+g+P+ p+tP++R+evl+W KIAA1402 346 YSEIEQLQAQIRNL-TVLTPEGEAGLSWPVGLPA---PFTPHSRFEVLGW 391 eyfTgthlfscaDgLakePretldgaeRaDlaDvveqaLeelNrnasprl +yfT++h+fscaDg +P+++l+ga+RaD++D++e+aLe+lNr+++prl KIAA1402 392 DYFTEQHTFSCADG---APKCPLQGASRADVGDALETALEQLNRRYQPRL 438 RvKGAGSAAAYASDViKLqfqsLqnGYRRfdPtrGmdYtLDLlLRKTVNE R +q+q+L+nGYRRfdP+rGm+YtLDLlL KIAA1402 439 R----------------FQKQRLLNGYRRFDPARGMEYTLDLLL------ 466 mPEVDNRFESdleaahpegkrrilvrRrayVlrplsrvqiveeevldaqp e ++++g+rr+l+ Rr+++lrplsrv+i+ p KIAA1402 467 ------------ECVTQRGHRRALA-RRVSLLRPLSRVEIL--------P 495 spyvteatNSGalSFLSNSLKKLVPFqLPGSKseHkePKDKrihvllPLA +pyvteat r++++lPL KIAA1402 496 MPYVTEAT---------------------------------RVQLVLPL- 511 legrvdsalrFleafaklCLFepneDravlLlvllYgleeerkvreDpFk l++++++a++Fleafa+ +L ep+e +a+l+l+l+Yg++e+ +++ DpF+ KIAA1402 512 LVAEAAAAPAFLEAFAANVL-EPRE-HALLTLLLVYGPREGGRGAPDPFL 559 avKaeaaELerdyRikslagariawlsVsPALseefsrpvDPqSWLLHAS +vKa+aaELer R++ g+r+awl+V+ +++p+ KIAA1402 560 GVKAAAAELER--RYP---GTRLAWLAVR------AEAPS---------- 588 mYGPRqLLaLrlgdealpkhgldtLlfLadVdmvfttdFLnRcRmNTIlG ++rl+d+ ++kh++dtL+fL++V++++++++LnRcRmN+I+G KIAA1402 589 --------QVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISG 630 wQvYFPvvFseYShPaisymEmTEKEEketPteqareaALSslqggklPs wQ++FPv+F+e+ +Pa+s+ +++P++ +++ + +g +Ps KIAA1402 631 WQAFFPVHFQEF-NPALSP--------QRSPPGPPGAGPDPPSPPGADPS 671 egetlgvsrdtGrFdrqgygetcfYksDyvaARarLaqqeVgGfdEeeIe +g++ g GrFdrq+++e+cfY++Dy+aARarLa+++ +G++ e KIAA1402 672 RGAPIG-----GRFDRQASAEGCFYNADYLAARARLAGEL-AGQE----E 711 GWGlEdvDLfekflrfGEETRPPGVESiLDmFVAAqsslhvlRavEPgLv +++lE+++++ +flrf s+lh++RavEPgLv KIAA1402 712 EEALEGLEVMDVFLRF--------------------SGLHLFRAVEPGLV 741 FGhryhprlCdpnsLdteqyhrClrSkaenlASrdQL<-* ++++ r+C+p+ L++e+yhrC+ S++e+l+ r+QL KIAA1402 742 --QKFSLRDCSPR-LSEELYHRCRLSNLEGLGGRAQL 775 PF05679.6.ls: domain 1 of 1, from 258 to 775: score 932.6, E = 1.6e-277 *->hlekClrdmltadeDvlelGRCvrdatGvgClgthegvqyyemqsle hl++C++d+l+a++D+ +lGRC++d +GvgC+++h+g+qy +s+e KIAA1402 258 HLDGCRGDILSARPDE-WLGRCLIDSLGVGCVSQHQGQQY---RSFE 300 lsnseaekesyierlkepafksAltvhPvknpadmyrLHkyflrlelera l+++++++++ ++af sA++vhPv ++++myrLHk+f++lelera KIAA1402 301 LAKNRDPEKE-----GSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERA 345 reeiiqLeaeisrlAeysasegirkisWplgiPpSFmpstPnnRyevltW ++ei+qL+a+i++l +++++eg++++sWp+g+P+ p+tP++R+evl+W KIAA1402 346 YSEIEQLQAQIRNL-TVLTPEGEAGLSWPVGLPA---PFTPHSRFEVLGW 391 eyfTgthlfscaDgLakePretldgaeRaDlaDvveqaLeelNrnasprl +yfT++h+fscaDg +P+++l+ga+RaD++D++e+aLe+lNr+++prl KIAA1402 392 DYFTEQHTFSCADG---APKCPLQGASRADVGDALETALEQLNRRYQPRL 438 RvKGAGSAAAYASDViKLqfqsLqnGYRRfdPtrGmdYtLDLlLRKTVNE R +q+q+L+nGYRRfdP+rGm+YtLDLlL KIAA1402 439 R----------------FQKQRLLNGYRRFDPARGMEYTLDLLL------ 466 mPEVDNRFESdleaahpegkrrilvrRrayVlrplsrvqiveeevldaqp e ++++g+rr+l+ Rr+++lrplsrv+i+ p KIAA1402 467 ------------ECVTQRGHRRALA-RRVSLLRPLSRVEIL--------P 495 spyvteatNSGalSFLSNSLKKLVPFqLPGSKseHkePKDKrihvllPLA +pyvteat r++++lPL KIAA1402 496 MPYVTEAT---------------------------------RVQLVLPL- 511 legrvdsalrFleafaklCLFepneDravlLlvllYgleeerkvreDpFk l++++++a++Fleafa+ +L ep+e +a+l+l+l+Yg++e+ +++ DpF+ KIAA1402 512 LVAEAAAAPAFLEAFAANVL-EPRE-HALLTLLLVYGPREGGRGAPDPFL 559 avKaeaaELerdyRikslagariawlsVsPALseefsrpvDPqSWLLHAS +vKa+aaELer R++ g+r+awl+V+ +++p+ KIAA1402 560 GVKAAAAELER--RYP---GTRLAWLAVR------AEAPS---------- 588 mYGPRqLLaLrlgdealpkhgldtLlfLadVdmvfttdFLnRcRmNTIlG ++rl+d+ ++kh++dtL+fL++V++++++++LnRcRmN+I+G KIAA1402 589 --------QVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISG 630 wQvYFPvvFseYShPaisymEmTEKEEketPteqareaALSslqggklPs wQ++FPv+F+e+ +Pa+s+ +++P++ +++ + +g +Ps KIAA1402 631 WQAFFPVHFQEF-NPALSP--------QRSPPGPPGAGPDPPSPPGADPS 671 egetlgvsrdtGrFdrqgygetcfYksDyvaARarLaqqeVgGfdEeeIe +g++ g GrFdrq+++e+cfY++Dy+aARarLa+++ +G++ e KIAA1402 672 RGAPIG-----GRFDRQASAEGCFYNADYLAARARLAGEL-AGQE----E 711 GWGlEdvDLfekflrfGEETRPPGVESiLDmFVAAqsslhvlRavEPgLv +++lE+++++ +flrf s+lh++RavEPgLv KIAA1402 712 EEALEGLEVMDVFLRF--------------------SGLHLFRAVEPGLV 741 FGhryhprlCdpnsLdteqyhrClrSkaenlASrdQL<-* ++++ r+C+p+ L++e+yhrC+ S++e+l+ r+QL KIAA1402 742 --QKFSLRDCSPR-LSEELYHRCRLSNLEGLGGRAQL 775 //