# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/eg01672.fasta.huge -Q ../query/KIAA1404.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1404, 1925 aa vs ./tmplib.24314 library 1985580 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.6785+/-0.00729; mu= 17.8310+/- 0.496 mean_var=190.8669+/-45.514, 0's: 0 Z-trim: 14 B-trim: 12 in 1/39 Lambda= 0.092834 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 42, opt: 30, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0221 ( 1151 res) ha02799 (1151) 287 52.6 6.6e-07 KIAA0149 ( 830 res) ha01221 ( 830) 276 50.9 1.5e-06 KIAA0083 ( 1077 res) ha03631 (1077) 247 47.2 2.6e-05 KIAA0560 ( 1521 res) hj07625 (1521) 243 46.9 4.5e-05 KIAA1781 ( 974 res) fg06971(revised) ( 974) 220 43.5 0.0003 KIAA0054 ( 1943 res) ha00503s1 (1943) 198 41.0 0.0034 KIAA1455 ( 2450 res) ef02451 (2450) 191 40.3 0.0073 >>KIAA0221 ( 1151 res) ha02799 (1151 aa) initn: 382 init1: 208 opt: 287 Z-score: 215.9 bits: 52.6 E(): 6.6e-07 Smith-Waterman score: 459; 31.858% identity (60.177% similar) in 339 aa overlap (945-1266:610-936) 920 930 940 950 960 970 KIAA14 LNTMTAAEANEIEDVWHLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELR :: . .: . . :..:: . .: :: . KIAA02 KSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYR-ALKRTAERE 580 590 600 610 620 630 980 990 1000 1010 1020 1030 KIAA14 LQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHL : : .:.:. : .::. : : :.. : ....:.... : . .. . . ..: KIAA02 L------LMNADVICCTCVGAGDPR--LAKMQFRSILIDESTQATEPECMVPVVLGAKQL 640 650 660 670 680 690 1040 1050 1060 1070 1080 1090 KIAA14 ILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHI ::.::: :: : . :: .: ::::::: ..: .::. :.:: : .. . . . KIAA02 ILVGDHCQLGPVVMCKKAAKA-GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIF 700 710 720 730 740 1100 1110 1120 1130 1140 KIAA14 YQ-DLENHPSVLKYEKIK-GVS-------SNLFFVEHNFPEQEIQEGKSHQNQHEAHFVV :. .:.: .: ...: : . . .:: . :. . : :. :. :: : KIAA02 YEGSLQN--GVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE 750 760 770 780 790 800 1150 1160 1170 1180 1190 KIAA14 ELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMP------AKTFAGVRVHVVDKYQGEEN .. .: :.:: :.: : :: : . : .: . :.. :: .::.:. KIAA02 KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK 810 820 830 840 850 860 1200 1210 1220 1230 1240 1250 KIAA14 DIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRE :.:.:: ::.:.. .:::. :. :::.::. :. .:: . :.: :::..... .: KIAA02 DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKE 870 880 890 900 910 920 1260 1270 1280 1290 1300 1310 KIAA14 NNQI--GPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYD .. . ::. KIAA02 QKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGR 930 940 950 960 970 980 >>KIAA0149 ( 830 res) ha01221 (830 aa) initn: 153 init1: 89 opt: 276 Z-score: 209.2 bits: 50.9 E(): 1.5e-06 Smith-Waterman score: 317; 27.221% identity (40.688% similar) in 349 aa overlap (1264-1570:96-413) 1240 1250 1260 1270 1280 1290 KIAA14 GMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVPEG :: : : :: : :. . KIAA01 DEVCVKPGLCRCKPGFFGAHCSSRCPGQYWGPDCRESCPCHP--HGQCEPATGACQCQAD 70 80 90 100 110 120 1300 1310 1320 1330 1340 KIAA14 GCSLPCEFRLGCG-H-VC---TRACHPYDSSHKEFQCMKPCQKVICQEGHRCPLVCFQEC . ::: .:: : : : .:: . . : .::: : . : : KIAA01 RWGARCEFPCACGPHGRCDPATGVCH-CEPGWWSSTCRRPCQ---C---NTAAARCEQAT 130 140 150 160 170 1350 1360 1370 1380 1390 1400 KIAA14 QPCQVKVPKIIPRCGHEQMVPCSVPESDFCCQEPCSK-SLRCGHRCSHPCGEDCVQLCSE : : ::. . :. : :: . : ::. : . : .: : : KIAA01 GACVCKPGWWGRRCSFR----CN------CHGSPCEQDSGRCACRPGWW-GPECQQQCE- 180 190 200 210 220 1410 1420 1430 1440 1450 KIAA14 MVTIKLKCGHSQPVKCGHVEGLL---------YGGLLVKCTTKCGTILDCGH--PC-P-- .. .:. .. .: :. :. :.:. .:: : : :: : KIAA01 --CVRGRCSAASG-ECTCPPGFRGARCELPCPAGSHGVQCAHSCGR---CKHNEPCSPDT 230 240 250 260 270 1460 1470 1480 1490 KIAA14 GSCHSCFEGRFHERCQQPCKRLLI---CSHKCQEPCIGE-CPP----CQRT--------C :::.:: : .::::: . : ..: . :: : : ::: : KIAA01 GSCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGWLGPRC 280 290 300 310 320 330 1500 1510 1520 1530 1540 1550 KIAA14 QNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPCTKLL---VCG .. : . . :: : ::. :. .:: : : . : . :. KIAA01 EDPCPTGTFGEDCGSTCPTCVQGS---CDTVTGDCVCSAGYWGPSCNASCPAGFHGNNCS 340 350 360 370 380 390 1560 1570 1580 1590 1600 1610 KIAA14 HPCI---GLCGEPCPKKCRICHMDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYM :: ::: .: .:. KIAA01 VPCECPEGLC-HPVSGSCQPGSGSRDTALIVGSLVPLLLLFLGLACCACCCWAPRSDLKD 400 410 420 430 440 450 >>KIAA0083 ( 1077 res) ha03631 (1077 aa) initn: 281 init1: 115 opt: 247 Z-score: 187.2 bits: 47.2 E(): 2.6e-05 Smith-Waterman score: 322; 27.198% identity (56.868% similar) in 364 aa overlap (956-1289:726-1076) 930 940 950 960 970 980 KIAA14 IEDVWHLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDA : .. .: .. . : : :.:. .. KIAA00 HSAVDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLEELY---NS 700 710 720 730 740 750 990 1000 1010 1020 1030 1040 KIAA14 QVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRP :.. :: . .. . .:. . ::.::... . .. : . ....:.:::::: : KIAA00 QLIVATTCMGINHPIFSRKIFD-FCIVDEASQISQPICLGPLFFS-RRFVLVGDHQQL-P 760 770 780 790 800 1050 1060 1070 1080 1090 1100 KIAA14 SANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQD-LENHP-- . :. ... :::.:: . . :.:. :.:: .: : . :. :: KIAA00 PLVLNREARALGMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDK 810 820 830 840 850 860 1110 1120 1130 KIAA14 ---SVLKYEKIKGVSSNL-FFVEHN----------------------FPEQEIQEGKSHQ .:.. ...: :. .: :..... : : : . . KIAA00 VANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVS 870 880 890 900 910 920 1140 1150 1160 1170 1180 1190 KIAA14 NQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQG : ::...: : . :. ::.: :.. : :: . :. :.... :.:..:::::: KIAA00 NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLL-ARSIGMVEVNTVDKYQG 930 940 950 960 970 980 1200 1210 1220 1230 1240 1250 KIAA14 EENDIILLSLVRSNQEGKVG-FLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIH ....:.:.:.::::..: :: .:. :. ::..:::. . .: . : : :... KIAA00 RDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLN 990 1000 1010 1020 1030 1040 1260 1270 1280 1290 1300 1310 KIAA14 TLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHP : .. : . : ..: ..: .:::. KIAA00 HLNSEKLI---IDLPSREH---ESLCHILGDFQRE 1050 1060 1070 1320 1330 1340 1350 1360 1370 KIAA14 YDSSHKEFQCMKPCQKVICQEGHRCPLVCFQECQPCQVKVPKIIPRCGHEQMVPCSVPES >>KIAA0560 ( 1521 res) hj07625 (1521 aa) initn: 394 init1: 127 opt: 243 Z-score: 182.9 bits: 46.9 E(): 4.5e-05 Smith-Waterman score: 414; 32.698% identity (61.270% similar) in 315 aa overlap (954-1244:1038-1346) 930 940 950 960 970 980 KIAA14 NEIEDVWHLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILK .::.. ...:.: . : .. : ..: KIAA05 EYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRSKYL-LVK 1010 1020 1030 1040 1050 1060 990 1000 1010 1020 1030 KIAA14 DAQVVGMTTTGAAKYRQILQKVEPRI--VIVEEAAEVLEAHT-IATLSKACQ-------H .:....:: : :: :. : :. . ...::::..:: .: : : . : . KIAA05 EAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKR 1070 1080 1090 1100 1110 1120 1040 1050 1060 1070 1080 1090 KIAA14 LILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPH :.::::.:: : . . . : :.: ::: :.:.:..: : :. : : . : . . KIAA05 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWR 1130 1140 1150 1160 1170 1180 1100 1110 1120 1130 1140 KIAA14 IYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQE-GKS------HQNQHEAHFVVE :..: : : : ... ....:.. . . ...: :.: .:: ::..:: KIAA05 -YKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVA 1190 1200 1210 1220 1230 1240 1150 1160 1170 1180 1190 KIAA14 LCKYFLCQEYLPS-QITILTTYTGQLFCLRKLMPAKT----FAGV--RVHVVDKYQGEEN : : .: :. .:.:::::.:: .: .. . . : .: .::..::..: KIAA05 LFMY-MCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQN 1250 1260 1270 1280 1290 1300 1200 1210 1220 1230 1240 1250 KIAA14 DIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRE : :::::::. :: :. :. ::.:::. :.: .. .... KIAA05 DYILLSLVRTRA---VGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTA 1310 1320 1330 1340 1350 1360 1260 1270 1280 1290 1300 1310 KIAA14 NNQIGPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSS KIAA05 RPLHLHIIPTEPFPTTRKNGERPSHEVQIIKNMPQMANFVYNMYMHLIQTTHHYHQTLLQ 1370 1380 1390 1400 1410 1420 >>KIAA1781 ( 974 res) fg06971(revised) (974 aa) initn: 151 init1: 94 opt: 220 Z-score: 168.1 bits: 43.5 E(): 0.0003 Smith-Waterman score: 319; 27.302% identity (44.127% similar) in 315 aa overlap (1294-1566:114-411) 1270 1280 1290 1300 KIAA14 GPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLG--C--------------GH ::.:::. : : : : KIAA17 CNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPGYTGV 90 100 110 120 130 140 1310 1320 1330 1340 1350 KIAA14 VCTRACHPYD-SSHKEFQCMKPCQKV-ICQE--GH-RCP-----LVCFQECQP------C : . : : . ..: :..: :::. :.. :. :: :: : : : : KIAA17 YCEELCPPGSHGAHCELRC--PCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNC 150 160 170 180 190 200 1360 1370 1380 1390 1400 KIAA14 QVKVP-KIIPRCGH-EQMVPCSVPESDFCCQEPCSKSLRCGHRCSHPCGEDCVQ--LCSE . : . .: : . :.. ::: : . : .::. : :: . :: KIAA17 SQDCPCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFG-SFGFQCSQRC--DCHNGGQCSP 210 220 230 240 250 1410 1420 1430 1440 1450 1460 KIAA14 MVTIKLKC--GHSQPVKCGHV---EGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEG .: .: :.. : .: . ::: : . : . ..: :: :.: .: : KIAA17 -TTGACECEPGYKGP-RCQERLCPEGLHGPGCTLPCPCDADNTISC-HPVTGAC-TCQPG 260 270 280 290 300 310 1470 1480 1490 1500 1510 1520 KIAA14 RFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCV ..:.. : . . :: :: :: . . . . : : . :. :. KIAA17 WSGHHCNESCP-VGYYGDGCQLPCT-----CQNGADCHSITGGCTCAPGFMGEVCAVSCA 320 330 340 350 360 1530 1540 1550 1560 1570 1580 KIAA14 WRCQHYQCTKLCSEPCNRPPCYVPCTKLLVCGHPCIGL-CGEPCPKKCRICHMDEVTQIF .:...:: :: : .: . :: : ::: KIAA17 AGTYGPNCSSICS--CNNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCA 370 380 390 400 410 420 1590 1600 1610 1620 1630 1640 KIAA14 FGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDDEVAIRLKVCPICQVPIRKNLRYGT KIAA17 NGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAG 430 440 450 460 470 480 >>KIAA0054 ( 1943 res) ha00503s1 (1943 aa) initn: 102 init1: 65 opt: 198 Z-score: 149.3 bits: 41.0 E(): 0.0034 Smith-Waterman score: 211; 27.011% identity (52.874% similar) in 348 aa overlap (965-1263:749-1078) 940 950 960 970 980 990 KIAA14 SSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTG .::. .. .:: ::: :: .: . KIAA00 GNPQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKED--ILKHRVVV--VTLN 720 730 740 750 760 770 1000 1010 1020 1030 1040 KIAA14 AAKYRQILQKVEPRI---VIVEEAAEVLEAHTIATLSKACQH--LILIGDHQQLRPSANV ...: :. .:: . ....:::...: .:: :. : :. ..: :::.:: : : KIAA00 TSQYLCQLD-LEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPF--V 780 790 800 810 820 830 1050 1060 1070 1080 1090 1100 KIAA14 Y-DLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLE---NHPSVL : ..:.. ::.:::..:: :.: :.: . :.. : :. : : KIAA00 YSEFARERNLHVSLLDRL-----------YEHYPAEFPCRILLCENYRSHEAIINYTSEL 840 850 860 870 880 1110 1120 1130 1140 1150 KIAA14 KYE-KI----KGVSSNLFFVEHNFPE--QEIQEGKS--HQNQHEAHFVVELC-----KYF :: :. : . . :. : ...:: .: :. :. ::: :. KIAA00 FYEGKLMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWP 890 900 910 920 930 940 1160 1170 1180 1190 1200 1210 KIAA14 LCQEYLPS-QITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSN . : . .: ..: :. :.: .: . : .. : :. : . ::.. ...:: ::. KIAA00 VAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTR 950 960 970 980 990 1000 1220 1230 1240 KIAA14 QEGK---------------------VGFLQISNRICVALSRAKKGMYCIGNMQMLAKV-- . : :::. . . .:..::.. . .:. : .. KIAA00 HTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGR 1010 1020 1030 1040 1050 1060 1250 1260 1270 1280 1290 1300 KIAA14 --PLWSKIIHTLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGC .: ..: .::... KIAA00 CRKFWERFIALCHENSSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGS 1070 1080 1090 1100 1110 1120 >>KIAA1455 ( 2450 res) ef02451 (2450 aa) initn: 117 init1: 51 opt: 191 Z-score: 143.3 bits: 40.3 E(): 0.0073 Smith-Waterman score: 205; 26.692% identity (47.744% similar) in 266 aa overlap (1295-1531:269-505) 1270 1280 1290 1300 1310 1320 KIAA14 PMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQ : :. : :. . .:: . . . KIAA14 SGIWHLAFYNDGKNAEQVSFNTIVIESVVECPRNCH---GNGECVSGTCHCFPGFLGP-D 240 250 260 270 280 290 1330 1340 1350 1360 1370 KIAA14 CMKPCQKVICQ-EGH----RCPLVCFQ--ECQPCQVKVPKII-PRCGHEQMVPCSVPESD : . :.:. .:. :: .::. . :.: . . : :.:: . . : . KIAA14 CSRAACPVLCSGNGQYSKGRC--LCFSGWKGTECDVPTTQCIDPQCGGRGI--CIMGS-- 300 310 320 330 340 1380 1390 1400 1410 1420 1430 KIAA14 FCCQEPCSKSLRCGHRCSHPCGEDCVQL-CSEM-VTIKLKCGHSQPVKCGHVEGLLYGGL : :... . :. : . ::.. ::. : :. .: : .: : .: KIAA14 -CA---CNSGYK-GESCEEA---DCIDPGCSNHGVCIHGEC-HCSPGWGGSNCEILK--- 350 360 370 380 390 1440 1450 1460 1470 1480 KIAA14 LVKCTTKC---GTILDCGHPCPGSCHSCFEGR--FHERCQQPCKRLLIC---SHKCQEPC . : .: :: :. . : .: . : .: :. : .: . .:.: KIAA14 -TMCPDQCSGHGTYLQESGSC--TCDPNWTGPDCSNEICSVDCGSHGVCMGGTCRCEEGW 400 410 420 430 440 450 1490 1500 1510 1520 1530 KIAA14 IGECPPC-QRTCQNRCV-HSQCKK-KC-------GELCSPCVEPCVWRCQ-HYQCTKLCS : : : ::.:. ::. :. :: :: :: :. .: : :. . .:: KIAA14 TG--PACNQRACHPRCAEHGTCKDGKCECSQGWNGEHCT--IEGCPGLCNSNGRCTLDQN 460 470 480 490 500 1540 1550 1560 1570 1580 1590 KIAA14 EPCNRPPCYVPCTKLLVCGHPCIGLCGEPCPKKCRICHMDEVTQIFFGFEDEPDARFVQL KIAA14 GWHCVCQPGWRGAGCDVAMETLCTDSKDNEGDGLIDCMDPDCCLQSSCQNQPYCRGLPDP 510 520 530 540 550 560 1925 residues in 1 query sequences 1985580 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:56 2008 done: Thu Dec 18 15:20:58 2008 Total Scan time: 0.950 Total Display time: 0.430 Function used was FASTA [version 34.26.5 April 26, 2007]