hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01522896/chunk_1/iprscan-20080502-01522896.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1404 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01422.8.fs NF-X1 type zinc finger 31.8 5.4e-11 7 PF01422.8.ls NF-X1 type zinc finger 41.1 3.6e-09 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01422.8.ls 1/6 1305 1327 .. 1 23 [] 10.4 0.44 PF01422.8.ls 2/6 1337 1353 .. 1 23 [] 3.0 3.1 PF01422.8.ls 3/6 1389 1407 .. 1 23 [] 3.7 2.6 PF01422.8.ls 4/6 1448 1470 .. 1 23 [] 3.6 2.7 PF01422.8.ls 5/6 1478 1495 .. 1 23 [] 14.7 0.14 PF01422.8.ls 6/6 1553 1571 .. 1 23 [] 5.7 1.5 Alignments of top-scoring domains: PF01422.8.ls: domain 1 of 6, from 1305 to 1327: score 10.4, E = 0.44 *->CGlfkHkCqklCHp.dGpCpp..Cpq<-* CG H C + CHp d +++ +C + KIAA1404 1305 CG---HVCTRACHPyDSSHKEfqCMK 1327 PF01422.8.ls: domain 2 of 6, from 1337 to 1353: score 3.0, E = 3.1 *->CGlfkHkCqklCHpdGpCppCpq<-* G H+C+ C +C+pC+ KIAA1404 1337 -G---HRCPLVCFQ--ECQPCQV 1353 PF01422.8.ls: domain 3 of 6, from 1389 to 1407: score 3.7, E = 2.6 *->CGlfkHkCqklCHpdGpCpp.Cpq<-* CG H+C+ +C + +C + C + KIAA1404 1389 CG---HRCSHPCGE--DCVQlCSE 1407 PF01422.8.ls: domain 4 of 6, from 1448 to 1470: score 3.6, E = 2.7 *->CGlfkHkCqklCHpdGpCpp......Cpq<-* CG H C+ CH C +++ +++C+q KIAA1404 1448 CG---HPCPGSCHS---CFEgrfherCQQ 1470 PF01422.8.ls: domain 5 of 6, from 1478 to 1495: score 14.7, E = 0.14 *->CGlfkHkCqklCHpdGpCppCpq<-* C+ HkCq++C G+CppC++ KIAA1404 1478 CS---HKCQEPC-I-GECPPCQR 1495 PF01422.8.ls: domain 6 of 6, from 1553 to 1571: score 5.7, E = 1.5 *->CGlfkHkCqklCHpdGpCpp.Cpq<-* CG H C lC + pCp++C+ KIAA1404 1553 CG---HPCIGLCGE--PCPKkCRI 1571 //