hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01542159/chunk_1/iprscan-20080502-01542159.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1405 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.fs Kinesin motor domain 539.3 3.7e-159 1 PF00225.13.ls Kinesin motor domain 498.6 6.5e-147 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.ls 1/1 6 300 .. 1 424 [] 498.6 6.5e-147 PF00225.13.fs 1/1 41 300 .. 71 424 .] 539.3 3.7e-159 Alignments of top-scoring domains: PF00225.13.ls: domain 1 of 1, from 6 to 300: score 498.6, E = 6.5e-147 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe RP +r r++ ++ + ++++++ + KIAA1405 6 --RPAGGRAWGRPEGP------QGAALPPSQeERPSR---------G 35 atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe a ++ ++ eGyN+tIFAYGQTGSGK++TM+ KIAA1405 36 AG---------GREQGVT----------EGYNGTIFAYGQTGSGKSFTMQ 66 GstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKPk G +d p++++GiiPRa+e++Fe++ ++ e+ KIAA1405 67 GLPD--------------PPSQRGIIPRAFEHVFESV-QCAEN------- 94 lnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNEki +f+v++SylEIYNE + KIAA1405 95 ---------------------------------TKFLVRASYLEIYNEDV 111 rDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLteve rDLL + +k+k L+++e+p++G vyVkGL++++ KIAA1405 112 RDLLGAD-------------TKQK-LELKEHPEKG-----VYVKGLSMHT 142 VtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdttgs V+s+ + +++e G+knR+v+ T+mN+ SSRSH+iFti +e++ d KIAA1405 143 VHSVAQCEHIMETGWKNRSVGYTLMNKDSSRSHSIFTISIEMSAVD---- 188 vvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaanINk ++g+++ r +kLnLVDLAGSER+skTg A+g+RLkEa++IN+ KIAA1405 189 ------ERGKDHLRAGKLNLVDLAGSERQSKTG---ATGERLKEATKINL 229 SLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlMIani SLsaLGnVI+AL+d+ + +H+PYRDSKLTrLLQDSLGG N+KTlM+a++ KIAA1405 230 SLSALGNVISALVDG-RCKHVPYRDSKLTRLLQDSLGG--NTKTLMVACL 276 SPsssrNntnyeETLsTLrFAsRAKnIk<-* SP+++ ny+ETLsTLr+A+RAKnI+ KIAA1405 277 SPADN----NYDETLSTLRYANRAKNIR 300 PF00225.13.fs: domain 1 of 1, from 41 to 300: score 539.3, E = 3.7e-159 *->esvleGyNvtIFAYGQTGSGKTYTMeGstdsdksspnpsdsCttpee + v eGyN+tIFAYGQTGSGK++TM+G +d p++ KIAA1405 41 QGVTEGYNGTIFAYGQTGSGKSFTMQGLPD--------------PPS 73 epGiiPRaledlFerieerkerkpvfKPklnekgwellncqetligvsfd ++GiiPRa+e++Fe++ ++ e+ KIAA1405 74 QRGIIPRAFEHVFESV-QCAEN---------------------------- 94 trglsSdlyvedlefsvkvSylEIYNEkirDLLspsppqrgspskdnekk +f+v++SylEIYNE +rDLL + + KIAA1405 95 ------------TKFLVRASYLEIYNEDVRDLLGAD-------------T 119 kkkpLrireDpkrGgkmdgvyVkGLteveVtsaeevlelLelGnknRtva k+k L+++e+p++G vyVkGL++++V+s+ + +++e G+knR+v+ KIAA1405 120 KQK-LELKEHPEKG-----VYVKGLSMHTVHSVAQCEHIMETGWKNRSVG 163 sTkmNeeSSRSHaiFtitveqrntdttgsvvtgkdnsgeesvrvskLnLV T+mN+ SSRSH+iFti +e++ d ++g+++ r +kLnLV KIAA1405 164 YTLMNKDSSRSHSIFTISIEMSAVD----------ERGKDHLRAGKLNLV 203 DLAGSERaskTgatgAggrRLkEaanINkSLsaLGnVInALadnqkssHi DLAGSER+skTg A+g+RLkEa++IN+SLsaLGnVI+AL+d+ + +H+ KIAA1405 204 DLAGSERQSKTG---ATGERLKEATKINLSLSALGNVISALVDG-RCKHV 249 PYRDSKLTrLLQDSLGGGDNsKTlMIaniSPsssrNntnyeETLsTLrFA PYRDSKLTrLLQDSLGG N+KTlM+a++SP+++ ny+ETLsTLr+A KIAA1405 250 PYRDSKLTRLLQDSLGG--NTKTLMVACLSPADN----NYDETLSTLRYA 293 sRAKnIk<-* +RAKnI+ KIAA1405 294 NRAKNIR 300 //