hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01542159/chunk_1/iprscan-20080502-01542159.nocrc
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Query sequence: KIAA1405
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 469.5   1.7e-136   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1       6   307 ..     1   404 []   469.5 1.7e-136

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 6 to 307: score 469.5, E = 1.7e-136
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtvtvtvnFtFDkVF
                                   RP  +r   ++    ++ +             + 
    KIAA1405     6    -------------RPAGGRAWGRP----EGPQ------------GAA 23   

                   WrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQTGSGKTyTM
                          p++  e   +  +    + + +GYN+ TIFAYGQTGSGK++TM
    KIAA1405    24 ------LPPSQEERPSRGAG-GREQGVTEGYNG-TIFAYGQTGSGKSFTM 65   

                   sGtptdpgilsndladitpdepGiIPRaledlFekide.....fsVkvSy
                    G p            ++p ++GiIPRa+e++Fe++++ ++++f+V++Sy
    KIAA1405    66 QGLP------------DPPSQRGIIPRAFEHVFESVQCaentkFLVRASY 103  

                   lEIYNEkirDLLspspenSksrGkhakqsskkkLrirEdkngnrhdapkL
                   lEIYNE +rDLL+ +               k+kL+++E++          
    KIAA1405   104 LEIYNEDVRDLLGADT--------------KQKLELKEHPE--------- 130  

                   trlrgqggvyVvGLtevsVsSaeevlellerGnknRtvaaTkmNeeSSRS
                          gvyV+GL++++V+S+++ ++++e G+knR+v+ T+mN +SSRS
    KIAA1405   131 ------KGVYVKGLSMHTVHSVAQCEHIMETGWKNRSVGYTLMNKDSSRS 174  

                   HaiFtitleqkeklepiadektesstnegteqiksskLnLVDLAGSERas
                   H+iFti +e+                + g++  + +kLnLVDLAGSER+s
    KIAA1405   175 HSIFTISIEMS------------AVDERGKDHLRAGKLNLVDLAGSERQS 212  

                   kTgseaeGdRLkEaqnINkSLlaLGnVInALaddshdsaeseatkqaggk
                   kTg  a+G+RLkEa++IN+SL+aLGnVI+AL+d               g+
    KIAA1405   213 KTG--ATGERLKEATKINLSLSALGNVISALVD---------------GR 245  

                   ssHIPYRDSKLTrLLQdSLGGNsKTlMIanvSPsssnyeETlsTLrFAsR
                    +H+PYRDSKLTrLLQdSLGGN+KTlM+a++SP++ ny+ETlsTLr+A+R
    KIAA1405   246 CKHVPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANR 295  

                   aksIknkpavne<-*
                   ak+I+nkp +ne   
    KIAA1405   296 AKNIRNKPRINE    307  

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