# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh00894mrp1.fasta.huge -Q ../query/KIAA1407.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1407, 744 aa
 vs ./tmplib.24314 library

1986761 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 11.0593+/-0.00721; mu= -15.5556+/- 0.482
 mean_var=400.5839+/-99.538, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.064081

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1319  ( 1208 res)   fh13717                    (1208)  246 37.5  0.0092


>>KIAA1319  ( 1208 res)   fh13717                         (1208 aa)
 initn:  90 init1:  90 opt: 246  Z-score: 141.5  bits: 37.5 E(): 0.0092
Smith-Waterman score: 253;  20.631% identity (54.928% similar) in 761 aa overlap (5-744:482-1177)

                                         10        20        30    
KIAA14                           EMRHKQVKENRLRREKELEYQRIEKTLKKSAFLE
                                     ..: :.. : :..:. .. : :  :.:. :
KIAA13 ELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGALKE
             460       470       480       490       500       510 

           40        50        60          70         80        90 
KIAA14 AQCLVQEEKKRKALEAKKEEEEIQREMVKLRRE--IIE-RRRTVKAAWKIEKKRQEENSQ
            ..: ..   . ... :...: :    ..  ..: .:. ..:  .  ... ::.:.
KIAA13 EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAERQKMSALVRGLQRELEETSE
             520       530       540       550       560       570 

              100       110       120       130       140       150
KIAA14 NSSE-KVMFQSTHILPDEEKMVKERKRKLKEVLIQTFKENQQCQKRYFAAWHKLILDHRI
       .... . :::..          ::  :  :. :.:   :... ...     .  .:....
KIAA13 ETGHWQSMFQKN----------KEDLRATKQELLQLRMEKEEMEEELGEKIE--VLQREL
             580                 590       600       610           

              160          170       180       190       200       
KIAA14 KLGKAGTLSDWKIQL---KVLRAWRDYTRFQKLERETQALENDLREENRKQQLATEYNRK
       . ..:.. .  ....   ..::. ..  ..:  ::..: . .  :... ..:::.   : 
KIAA13 EQARASAGDTRQVEVLKKELLRTQEELKELQA-ERQSQEVAGRHRDRELEKQLAVL--RV
     620       630       640       650        660       670        

       210       220       230       240       250       260       
KIAA14 QVLRHCFTEWQHWHGAELLKRELALTKEETRKKMDALLQAASLGKLSANGLSGISLPEEA
       .. :    : :. .  . :..     .: .. :: :  .:. ::.  :   . .   .: 
KIAA13 EADRGRELEEQNLQLQKTLQQLRQDCEEASKAKMVAEAEATVLGQRRAAVETTLRETQEE
        680       690       700       710       720       730      

       270       280       290       300       310         320     
KIAA14 TAMVGPPVKNGQETAVPPLWEKPPLGSSGCMLSPPLGRTTTGNLQGSLQNV--SLSAPGN
       .      .  : :     : :   : ..:  .   : :     :..  :..  .:.:  .
KIAA13 NDEFRRRIL-GLEQQ---LKETRGLVDGGEAVEARL-RDKLQRLEAEKQQLEEALNASQE
        740        750          760        770       780       790 

         330       340       350        360       370       380    
KIAA14 KQHKTLGAEPSQQPGSNETLRTTSQKA-EPLCLGHFHNRHVFQQQLIEKQKKKLQEQQKT
       .. .  .:. . .   .:. :  .. . :   :..  ...  :...... : .:.::.. 
KIAA13 EEGSLAAAKRALEARLEEAQRGLARLGQEQQTLNRALEEEGKQREVLRRGKAELEEQKRL
             800       810       820       830       840       850 

            390       400       410       420       430       440  
KIAA14 ILEL--KKNLQLAEAQWAAEHALAVTEAQSHLLSKPREEEPRTCQMLVNSPVASPGTEGR
       . .   . : .: .    ...::   .::   :   .:.  :       . .   . .  
KIAA13 LDRTVDRLNKELEKIGEDSKQALQQLQAQ---LEDYKEKARREV-----ADAQRQAKDWA
             860       870       880          890            900   

            450       460       470        480       490       500 
KIAA14 SDSRNSLSGLRRKPKQLMTPHPILKAME-ERAIQRAECRRILAEKKKKQEEEKLAQLKAQ
       :..... .:: :   ...  .  :.: . ::   : . ...::.. .  :.:   . ..:
KIAA13 SEAEKTSGGLSRLQDEIQRLRQALQASQAERDTARLD-KELLAQRLQGLEQEAENKKRSQ
           910       920       930       940        950       960  

              510       520       530       540       550       560
KIAA14 EEE-RQKREAEEKEAQLERKREEKRLKKMKELEKQKRIKRNQQLEAIAKEHYERVLLRKK
       ... :: .  ::: ..:: . .:.  :.  ::  ..  .  .:.. .  :     :....
KIAA13 DDRARQLKGLEEKVSRLETELDEE--KNTVELLTDRVNRGRDQVDQLRTE-----LMQER
            970       980         990      1000      1010          

              570       580       590       600       610       620
KIAA14 GLEPWKRLRMQSKQNIQVAEEHYSLFLQRKYMLTWFQRSQESLARKMAQADQFYSQILLK
                 ...:...   .. ::  : : . : .  :.:.. .  :. .:. ::   .
KIAA13 ----------SARQDLEC--DKISLERQNKDLKTRLA-SSEGFQKPSASLSQLESQ---N
                  1020        1030      1040       1050            

              630       640       650       660       670       680
KIAA14 RVIQSWLQYVIDLQEEVRKFCVHFLQKKIFRAWFNMVREVKIDSQGKHEIAAEHSDRRIL
       ...:  ::      :: .:  ..  ..:. :     :.:..:. . ... . ...:.  :
KIAA13 QLLQERLQ-----AEEREKTVLQSTNRKLERK----VKELSIQIEDERQHVNDQKDQ--L
    1060           1070      1080          1090      1100          

              690       700        710        720       730        
KIAA14 WITLRTWKKFVKFMKEERVKEER-RQQLRRKVVEILP-DFQVPGRYHELYQQSDTW----
        . ... :. :   .::  . .  :.. .:.: :    . :. .: . :  ..:.:    
KIAA13 SLRVKALKRQVDEAEEEIERLDGLRKKAQREVEEQHEVNEQLQARIKSL--EKDSWRKAS
     1110      1120      1130      1140      1150        1160      

           740                                   
KIAA14 -SLSKTSLVNE                               
        : ....: ::                               
KIAA13 RSAAESALKNEGLSSDEEFDSVYDPSSIASLLTESNLQTSSC
       1170      1180      1190      1200        




744 residues in 1 query   sequences
1986761 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:05 2008 done: Thu Dec 18 15:21:05 2008
 Total Scan time:  0.580 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]