hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01592784/chunk_1/iprscan-20080502-01592784.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1408 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04050.5.ls Up-frameshift suppressor 2 412.7 4.8e-121 1 PF04050.5.fs Up-frameshift suppressor 2 410.9 1.7e-120 1 PF02854.9.ls MIF4G domain 364.8 1.3e-106 3 PF02854.9.fs MIF4G domain 363.6 3e-106 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02854.9.fs 1/3 194 360 .. 1 192 [. 36.6 1.5e-09 PF02854.9.ls 1/3 194 457 .. 1 230 [] 34.0 4.9e-07 PF02854.9.ls 2/3 595 784 .. 1 230 [] 125.5 1.4e-34 PF02854.9.fs 2/3 595 784 .. 1 230 [] 123.6 5.2e-34 PF02854.9.fs 3/3 802 1012 .. 1 230 [] 203.4 5e-58 PF02854.9.ls 3/3 802 1012 .. 1 230 [] 205.3 1.3e-58 PF04050.5.ls 1/1 1062 1244 .. 1 201 [] 412.7 4.8e-121 PF04050.5.fs 1/1 1062 1244 .. 1 201 [] 410.9 1.7e-120 Alignments of top-scoring domains: PF02854.9.fs: domain 1 of 3, from 194 to 360: score 36.6, E = 1.5e-09 *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl lkk++ +++kL+ + +e+ + l+ ++ + +l k++ KIAA1408 194 LKKNTAFVKKLK---TITEqQRDSLSHDFNGL---------NLSKYI 228 lelifekaveep..nfipayArLcalLnsknpgekteFgslllnrlqeeF e + ++++ +++ +++++ + Lc+l +++ +F ll+ + + F KIAA1408 229 AEAVASIVEAKLkiSDVNCAVHLCSLFHQRYA----DFAPSLLQVWKKHF 274 ekreleaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelle e + ee+ ++ + + +rF++EL +++t k l++++e l+ KIAA1408 275 EA------RKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLK 318 dlteedlqdqvrdeeslecllllLetiGklLdnsekskklmdeilerl<- + + d ++++ + +++++++++G +++ + ++++ + e++ KIAA1408 319 NIINAD----RESHTHVSVVISFCRHCGDDIA--GLVPRKVKSAAEKF 360 * KIAA1408 - - PF02854.9.ls: domain 1 of 3, from 194 to 457: score 34.0, E = 4.9e-07 *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl lkk++ +++kL+ + +e+ + l+ ++ + +l k++ KIAA1408 194 LKKNTAFVKKLK---TITEqQRDSLSHDFNGL---------NLSKYI 228 lelifekaveep..nfipayArLcalLnsknpgekteFgslllnrlqeeF e + ++++ +++ +++++ + Lc+l +++ +F ll+ + + F KIAA1408 229 AEAVASIVEAKLkiSDVNCAVHLCSLFHQRYA----DFAPSLLQVWKKHF 274 ekreleaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelle e + ee+ ++ + + +rF++EL +++t k l++++e l+ KIAA1408 275 EA------RKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLK 318 dlteedlqdqvrdeeslecllllLetiGklLdn................. + + d ++++ + +++++++++G +++ +++ ++ ++ + + KIAA1408 319 NIINAD----RESHTHVSVVISFCRHCGDDIAGlvprkvksaaekfnlsf 364 .................................................. ++++ +++++++ ++ ++ ++ +++ ++++++ +++++++++ +++ KIAA1408 365 ppseiispekqqpfqnllkeyftsltkhlkrdhrelqnterqnrrilhsk 414 ...sekskklmdeilerlqkillkrdkshvrvesepelssrirfmledli ++ se+ k+ +e+ +qk+l + + s +++ e++ KIAA1408 415 gelSEDRHKQYEEFAMSYQKLLAN-------------SQSLADLLDENMP 451 elrknk<-* +l ++k KIAA1408 452 DLPQDK 457 PF02854.9.ls: domain 2 of 3, from 595 to 784: score 125.5, E = 1.4e-34 *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl +++ l n+++ +++++ + +++ ++ k+ +k+l KIAA1408 595 DAFLQQLPNCVN--RDLIDkAAMDFCMNMNT---------KANRKKL 630 lelifekaveepnfipayArLcalLnsknpgekteFgslllnrlqeeFek ++ +f +++ ++ ++p yArL+a+L+++++ ++ + l +l+ +F+ KIAA1408 631 VRALFIVPRQRLDLLPFYARLVATLHPCMS----DVAEDLCSMLRGDFRF 676 releaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelledl + ++++++++++ ++vrF+gEL +f+++t l++lk ll+d+ KIAA1408 677 -----HVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDF 721 teedlqdqvrdeeslecllllLetiGklLdnsekskklmdeilerlqkil + + +e++++lLet+G++L++s++s + +le++ +++ KIAA1408 722 SH----------HHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKK 761 lkrdkshvrvesepelssrirfmledlielrknk<-* + +l+ r m+e+ ++ ++++ KIAA1408 762 QA-----------MHLDARYVTMVENAYYYCNPP 784 PF02854.9.fs: domain 2 of 3, from 595 to 784: score 123.6, E = 5.2e-34 *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl +++ l n+++ +++++ + +++ ++ k+ +k+l KIAA1408 595 DAFLQQLPNCVN--RDLIDkAAMDFCMNMNT---------KANRKKL 630 lelifekaveepnfipayArLcalLnsknpgekteFgslllnrlqeeFek ++ +f +++ ++ ++p yArL+a+L+++++ ++ + l +l+ +F+ KIAA1408 631 VRALFIVPRQRLDLLPFYARLVATLHPCMS----DVAEDLCSMLRGDFRF 676 releaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelledl + ++++++++++ ++vrF+gEL +f+++t l++lk ll+d+ KIAA1408 677 -----HVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDF 721 teedlqdqvrdeeslecllllLetiGklLdnsekskklmdeilerlqkil + + +e++++lLet+G++L++s++s + +le++ +++ KIAA1408 722 SH----------HHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKK 761 lkrdkshvrvesepelssrirfmledlielrknk<-* + +l+ r m+e+ ++ ++++ KIAA1408 762 QA-----------MHLDARYVTMVENAYYYCNPP 784 PF02854.9.fs: domain 3 of 3, from 802 to 1012: score 203.4, E = 5e-58 *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl +k ++++l+k++ +e+++++++kl ++d +e+++++ KIAA1408 802 RKLLYKDLSKVT-----TEkVLRQMRKLPWQD--------QEVKDYV 835 lelifekaveepnfipayArLcalLnsknpgekteFgslllnrlqeeFek +++ +++++ ++n+i++ A+L+a+L +++ ++g+ +++ ++e+++ KIAA1408 836 ICCMINIWNVKYNSIHCVANLLAGLVLYQE----DVGIQVVDGVLEDIRL 881 releaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelledl ++e ++ ++++rr+ ++FlgELyn++++++++i+ +l+++ +++ KIAA1408 882 -----GMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 926 teedlq....dqvrdeeslecllllLetiGklLdnsekskklmdeilerl ++d+ +++ d++++++++++++++L+t+G+++d +++sk+++d++l+++ KIAA1408 927 VNPDGSpsslDPPEHLFRIRLVCTILDTCGQYFD-RGSSKRKLDCFLVYF 975 qkillkrdkshvrvesepelssrirfmledlielrknk<-* q++++ ++ks+ ++++++++s +i++m+ d++el ++k KIAA1408 976 QRYVW-WKKSLEVWTKDHPFSIDIDYMISDTLELLRPK 1012 PF02854.9.ls: domain 3 of 3, from 802 to 1012: score 205.3, E = 1.3e-58 *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl +k ++++l+k++ +e+++++++kl ++d +e+++++ KIAA1408 802 RKLLYKDLSKVT-----TEkVLRQMRKLPWQD--------QEVKDYV 835 lelifekaveepnfipayArLcalLnsknpgekteFgslllnrlqeeFek +++ +++++ ++n+i++ A+L+a+L +++ ++g+ +++ ++e+++ KIAA1408 836 ICCMINIWNVKYNSIHCVANLLAGLVLYQE----DVGIQVVDGVLEDIRL 881 releaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelledl ++e ++ ++++rr+ ++FlgELyn++++++++i+ +l+++ +++ KIAA1408 882 -----GMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG 926 teedlq....dqvrdeeslecllllLetiGklLdnsekskklmdeilerl ++d+ +++ d++++++++++++++L+t+G+++d +++sk+++d++l+++ KIAA1408 927 VNPDGSpsslDPPEHLFRIRLVCTILDTCGQYFD-RGSSKRKLDCFLVYF 975 qkillkrdkshvrvesepelssrirfmledlielrknk<-* q++++ ++ks+ ++++++++s +i++m+ d++el ++k KIAA1408 976 QRYVW-WKKSLEVWTKDHPFSIDIDYMISDTLELLRPK 1012 PF04050.5.ls: domain 1 of 1, from 1062 to 1244: score 412.7, E = 4.8e-121 *->eesgAeteerdGqeeeldeddeeegsesddDddieeeEEsvdyleDd ee+gAetee++G+e+e++e++eeegs++ddD+++eeeEE++dyl+D+ KIAA1408 1062 EEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDS 1108 sdesetDeeksevriksdllksvDlvEdaDfeqeLkklLdASeEsEsLeq ++e+etDee++ev+ik+++lk+v++vEd+Df+q+L+k+++ E+L+q KIAA1408 1109 NKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMML-----ENLQQ 1153 rsLelrkvhelnvaFDiPLslkessrkdpyltgRVVGENGEEVldEeeaE rs+e++kvh+l+va iPL+lk+++rk+p+l+g +E+eaE KIAA1408 1154 RSGESVKVHQLDVA--IPLHLKSQLRKGPPLGG-----------GEGEAE 1190 saevmPfklLtkrGNKQqskiLeiPsdSaLvrstknqqaaEleErkrvKk sa++mPf++Lt++GNKQq+kiL++P++S+L+++++nqq+aE+eEr+r+Kk KIAA1408 1191 SADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKK 1240 LvLe<-* L+L+ KIAA1408 1241 LTLD 1244 PF04050.5.fs: domain 1 of 1, from 1062 to 1244: score 410.9, E = 1.7e-120 *->eesgAeteerdGqeeeldeddeeegsesddDddieeeEEsvdyleDd ee+gAetee++G+e+e++e++eeegs++ddD+++eeeEE++dyl+D+ KIAA1408 1062 EEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDS 1108 sdesetDeeksevriksdllksvDlvEdaDfeqeLkklLdASeEsEsLeq ++e+etDee++ev+ik+++lk+v++vEd+Df+q+L+k+++ E+L+q KIAA1408 1109 NKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMML-----ENLQQ 1153 rsLelrkvhelnvaFDiPLslkessrkdpyltgRVVGENGEEVldEeeaE rs+e++kvh+l+va iPL+lk+++rk+p+l+g +E+eaE KIAA1408 1154 RSGESVKVHQLDVA--IPLHLKSQLRKGPPLGG-----------GEGEAE 1190 saevmPfklLtkrGNKQqskiLeiPsdSaLvrstknqqaaEleErkrvKk sa++mPf++Lt++GNKQq+kiL++P++S+L+++++nqq+aE+eEr+r+Kk KIAA1408 1191 SADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKK 1240 LvLe<-* L+L+ KIAA1408 1241 LTLD 1244 //