hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01592784/chunk_1/iprscan-20080502-01592784.nocrc
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Query sequence: KIAA1408
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00543                                                 486.0   1.8e-141   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00543    1/3     194   390 ..     1   227 []   121.0  1.3e-31
SM00543    2/3     595   784 ..     1   227 []   184.1  1.4e-50
SM00543    3/3     799  1012 ..     1   227 []   181.0  1.2e-49

Alignments of top-scoring domains:
SM00543: domain 1 of 3, from 194 to 390: score 121.0, E = 1.3e-31
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                      +kk++ +++kL+ +++e++ + l+  +n+l           +l k++
    KIAA1408   194    LKKNTAFVKKLK-TITEQQRDSLSHDFNGL-----------NLSKYI 228  

                   ielifekaveepglqDklnfipayArLcalLnaknpdFgsllldrlqeeF
                    e++++++++++    k++++++ + Lc+l+++++ dF+ +ll+ + + F
    KIAA1408   229 AEAVASIVEAKL----KISDVNCAVHLCSLFHQRYADFAPSLLQVWKKHF 274  

                   ekrkddeekeklepkQvicdaeeeeleeleeeeeknrkrrlglvrFlgEL
                   e                           + ee+  n+ + +  +rF++EL
    KIAA1408   275 EA--------------------------RKEEKTPNITKLRTDLRFIAEL 298  

                   ynfqvltskiilellkelledlte......fslecllslLetcGkdLeek
                   + ++++t k+ l+l++e l+++++ +++++ ++ +++s++++cG d+++ 
    KIAA1408   299 TIVGIFTDKEGLSLIYEQLKNIINadreshTHVSVVISFCRHCGDDIAGL 348  

                   spklldellerlqdill......lsprlrfmledlielrknk<-*
                    p+++++  e+++  +++++  +++++  f+ ++  ++ ++    
    KIAA1408   349 VPRKVKSAAEKFNLSFPpseiisPEKQQPFQNLLKEYFTSLT    390  

SM00543: domain 2 of 3, from 595 to 784: score 184.1, E = 1.4e-50
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                      + ++++l+n+++ d++++ +++++  +n+           k+ +k+l
    KIAA1408   595    DAFLQQLPNCVNRDLIDKAAMDFCMNMNT-----------KANRKKL 630  

                   ielifekaveepglqDklnfipayArLcalLnaknpdFgsllldrlqeeF
                   ++++f ++++++      +++p yArL+a+L+++++d++++l+ +l+ +F
    KIAA1408   631 VRALFIVPRQRL------DLLPFYARLVATLHPCMSDVAEDLCSMLRGDF 674  

                   ekrkddeekeklepkQvicdaeeeeleeleeeeeknrkrrlglvrFlgEL
                   +                          ++ +++++n++++ ++vrF+gEL
    KIAA1408   675 RF-------------------------HVRKKDQINIETKNKTVRFIGEL 699  

                   ynfqvltskiilellkelledltefslecllslLetcGkdLe..ekspkl
                   ++f+++t ++ l++lk+ll+d+ ++++e++++lLetcG++L+++++s+ +
    KIAA1408   700 TKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFrsPESHLR 749  

                   ldellerlqdill...lsprlrfmledlielrknk<-*
                      lle+++++++  +l++r+ +m+e+++++++++   
    KIAA1408   750 TSVLLEQMMRKKQamhLDARYVTMVENAYYYCNPP    784  

SM00543: domain 3 of 3, from 799 to 1012: score 181.0, E = 1.2e-49
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                      e+ +++l ++Ls+  +e+ +++++kl +++          +e+++++
    KIAA1408   799    EYVRKLLYKDLSKVTTEKVLRQMRKLPWQD----------QEVKDYV 835  

                   ielifekaveepglqDklnfipayArLcalLnaknpdFgsllldrlqeeF
                   i++ +++++ ++      n+i+++A+L a+L +++ d+g++++d ++e++
    KIAA1408   836 ICCMINIWNVKY------NSIHCVANLLAGLVLYQEDVGIQVVDGVLEDI 879  

                   ekrkddeekeklepkQvicdaeeeeleeleeeeeknrkrrlglvrFlgEL
                   +                          ++e ++ k+++rr++ ++FlgEL
    KIAA1408   880 RL-------------------------GMEVNQPKFNQRRISSAKFLGEL 904  

                   ynfqvltskiilellkelledlte..............fslecllslLet
                   yn+++++s +i+++l+++++++ ++++++++ +++++ f++++++++L+t
    KIAA1408   905 YNYRMVESAVIFRTLYSFTSFGVNpdgspssldppehlFRIRLVCTILDT 954  

                   cGkdLe.ekspklldellerlqdill.............lsprlrfmled
                   cG+++++++s+++ld++l+++q++++ +++ +  +++++ s ++++m+ d
    KIAA1408   955 CGQYFDrGSSKRKLDCFLVYFQRYVWwkkslevwtkdhpFSIDIDYMISD 1004 

                   lielrknk<-*
                    +el ++k   
    KIAA1408  1005 TLELLRPK    1012 

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