HUGE

Gene/Protein Characteristic Table for KIAA1412

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00828
Accession No. :	AB037833
Description :	Transmembrane protein 2.
HUGO Gene Name :
Clone Name :	ha04795 [Vector Info]
Flexi ORF Clone :	pF1KSDA1412
Source :	Myeloblast cell line (KG-1)
Note :	We replaced fh12778, former representative clones for KIAA1412 with ha04795. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 5913 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1628 bp

Genome contig ID gi89161216r_73388307
PolyA signal sequence
(ATTAAA,-23)
+----*----+----*----+----*----+----
GAGATCTTACCTATTAAATATATTATTGGATTATG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
GTTCCTGAAGGTCATTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 r 73488307 73573213 24 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 1386 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9UHN6	100.0	Transmembrane p...	Homo sapiens
XP_001141007	99.7	transmembrane p...	Pan troglodytes
XP_541287	91.8	similar to tran...	Canis lupus fam...
XP_593521	90.9	similar to tran...	Bos taurus
AAH76570	86.9	Transmembrane p...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB033025	2e-153	48.7	KIAA1199

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 86 FICFAITSFSFFIALAIILGISS 108 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	86	FICFAITSFSFFIALAIILGISS	108	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GTGACAGCTTATAGTGAATGG

Primer_r
: CTTGGTACATGGAATAGTCTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1628 bp
Genome contig ID	gi89161216r_73388307
PolyA signal sequence (ATTAAA,-23)	+--------+--------+----*----+---- GAGATCTTACCTATTAAATATATTATTGGATTATG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* GTTCCTGAAGGTCATTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	r	73488307	73573213	24	99.7	Perfect prediction

Primer_f	: GTGACAGCTTATAGTGAATGG
Primer_r	: CTTGGTACATGGAATAGTCTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1412

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information