# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk08067mrp1.fasta.huge -Q ../query/KIAA1421.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1421, 1463 aa
 vs ./tmplib.24314 library

1986042 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.9321+/-0.00537; mu= 17.6717+/- 0.367
 mean_var=102.9748+/-24.496, 0's: 0 Z-trim: 2  B-trim: 31 in 1/39
 Lambda= 0.126389

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0453  ( 3209 res)   ff02431                    (3209)  220 52.6 1.4e-06


>>KIAA0453  ( 3209 res)   ff02431                         (3209 aa)
 initn: 273 init1: 135 opt: 220  Z-score: 210.1  bits: 52.6 E(): 1.4e-06
Smith-Waterman score: 305;  21.883% identity (57.506% similar) in 393 aa overlap (999-1382:592-964)

      970       980       990      1000      1010      1020        
KIAA14 EATMRTFDLTVVSYLKKISLDYHEIEGSKKKPLHLISSSDKPGLDLLKVEYIKADKNGPS
                                     .:  :...: :   .:.... . .::. : 
KIAA04 QRPTSASRKKQKEVQDKDYPLTPPPSPTVDEPKILVGKS-KFDDSLVHINIFLVDKKHPE
             570       580       590       600        610       620

     1030      1040      1050      1060      1070      1080        
KIAA14 FQTAFGKTEQTVKVAFSSLNLLLQTQALVASINYLTTIIPSDDQSISVAKEVQISTEKQQ
       :........... : :. :..:.  :. :. ....     .:.... .  :  . . : .
KIAA04 FSSSYNRVNRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMRLPPEGILHNVKLE
              630       640       650       660       670       680

     1090      1100      1110      1120      1130      1140        
KIAA14 KNSTLPKAIVSSRDSDIIDFRLFAKLNAFCVIVCNEKNNIAEIKIQGLDSSLSLQSRKQS
            :.: . :  .: .. .:  :.... ... .  ...:. ... : . : .     .
KIAA04 -----PHASMESGLQDPVNTKLDLKVHSLSLVLNKTTSELAKANVSKLVAHLEMIEGDLA
                   690       700       710       720       730     

     1150      1160       1170      1180        1190      1200     
KIAA14 LFARLENIIVTDVDPK-TVHKKAVSIMGNEVFRFNLDLY--PDATEGDLYTDMSKVDGVL
       : . . .. ..:.  .   ...  .  :.:.. :.   :  ::     :  .    :  .
KIAA04 LQGSIGSLSLSDLTCHGEFYRERFTTSGEEALIFQTFKYGRPDPL---LRREH---DIRV
         740       750       760       770       780               

        1210      1220      1230      1240      1250      1260     
KIAA14 SLNVGCIQIVYLHKFLMSLLNFLNNFQTAKESLSAATAQAAERAATSVKDLAQRSFRVSI
       :: .. .: :. ..:   .. :...:   .. :.    : :   . .:.: :::  :: .
KIAA04 SLRMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGR---QRAAIEGQTVRDQAQRCSRVLL
     790       800       810       820          830       840      

        1270      1280      1290      1300            1310         
KIAA14 NIDLKAPVIVIPQSSISTNAVVVDLGLIRVHNQFSLV------SDEDYLNPPVIDRMDVQ
       .:.  :::..::.:: :.: .:..:: ..:.:.: ..      : .:  . :  .   . 
KIAA04 DIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFSLQDKESVPSASPTGIP
        850       860       870       880       890       900      

    1320      1330      1340      1350      1360      1370         
KIAA14 LTKLTLYRTVIQPGIYHPDIQLLHPINLEFLVNRNLAASWYHKVPVVEIKGHLDSMNVSL
         .:    .. .:   : . :.  :     :.. .:..   . :: .  : .  . ..:.
KIAA04 KHSLRKTTSTEEPRGTHSQGQFTMP-----LAGMSLGSLKSEFVPSTSTKQQGPQPTLSV
        910       920       930            940       950       960 

    1380      1390      1400      1410      1420      1430         
KIAA14 NQEDLNLLFRILTENLCEGTEDLDKVKPRVQETGEIKEPLEISISQDVHDSKNTLTTGVE
       .::                                                         
KIAA04 GQESSSPEDHVCLLDCVVVDLQDMDIFAAERHPREYSKAPEDSSGDLIFPSYFVRQTGGS
             970       980       990      1000      1010      1020 




1463 residues in 1 query   sequences
1986042 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:49 2008 done: Thu Dec 18 15:21:50 2008
 Total Scan time:  0.830 Total Display time:  0.100

Function used was FASTA [version 34.26.5 April 26, 2007]