hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02290139/chunk_1/iprscan-20080502-02290139.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1424 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 242.8 2.5e-71 1 PF00620.17.ls RhoGAP domain 244.7 1.8e-70 1 PF00169.19.fs PH domain 70.7 4.8e-21 1 PF00169.19.ls PH domain 72.7 1.1e-18 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 47.1 1.4e-12 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 49.0 1.5e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.fs 1/1 36 142 .. 1 86 [] 47.1 1.4e-12 PF00595.14.ls 1/1 36 142 .. 1 86 [] 49.0 1.5e-11 PF00169.19.fs 1/1 918 1026 .. 1 92 [] 70.7 4.8e-21 PF00169.19.ls 1/1 918 1026 .. 1 92 [] 72.7 1.1e-18 PF00620.17.fs 1/1 1148 1301 .. 1 155 [] 242.8 2.5e-71 PF00620.17.ls 1/1 1148 1301 .. 1 155 [] 244.7 1.8e-70 Alignments of top-scoring domains: PF00595.14.fs: domain 1 of 1, from 36 to 142: score 47.1, E = 1.4e-12 *->evtlekedkrgglGfsikggsdkga...................... +vtl++ + +g+Gf+++ + ++++ + + ++++++++ KIAA1424 36 TVTLKR--TSQGFGFTLR------Hfivyppesaiqfsykdeengnr 74 ..........dkgifvsevlpGsgaAeagGrLqaGDqIlsvNGqdlenls +++++++ ++ +ifv+ v +G g+A +G L+ GD+I++vNG+++ + + KIAA1424 75 ggkqrnrlepMDTIFVKQVKEG-GPAFEAG-LCTGDRIIKVNGESVIGKT 122 heeavlalkgsggsevtLtvl<-* ++++++++s + ++ L v+ KIAA1424 123 YSQVIALIQNSDT-TLELSVM 142 PF00595.14.ls: domain 1 of 1, from 36 to 142: score 49.0, E = 1.5e-11 *->evtlekedkrgglGfsikggsdkga...................... +vtl++ + +g+Gf+++ + ++++ + + ++++++++ KIAA1424 36 TVTLKR--TSQGFGFTLR------Hfivyppesaiqfsykdeengnr 74 ..........dkgifvsevlpGsgaAeagGrLqaGDqIlsvNGqdlenls +++++++ ++ +ifv+ v +G g+A +G L+ GD+I++vNG+++ + + KIAA1424 75 ggkqrnrlepMDTIFVKQVKEG-GPAFEAG-LCTGDRIIKVNGESVIGKT 122 heeavlalkgsggsevtLtvl<-* ++++++++s + ++ L v+ KIAA1424 123 YSQVIALIQNSDT-TLELSVM 142 PF00169.19.fs: domain 1 of 1, from 918 to 1026: score 70.7, E = 4.8e-21 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. keGwL+ + ++++++ +++++ wk+ y+vL++ +L++ykdk + KIAA1424 918 AAKEGWLHFRPlvtdkgkrvggSIRPWKQMYVVLRGHSLYLYKDKRe 964 ....kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqaeseee ++++++ i+++ + +++ + +krkn+F+++t+d + l+qae+ ++ KIAA1424 965 qttpSEEEQPISVNACLIDISYSEtKRKNVFRLTTsDC-ECLFQAEDRDD 1013 rkeWvkaiqsair<-* + W+k iq+++ KIAA1424 1014 MLAWIKTIQESSN 1026 PF00169.19.ls: domain 1 of 1, from 918 to 1026: score 72.7, E = 1.1e-18 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. keGwL+ + ++++++ +++++ wk+ y+vL++ +L++ykdk + KIAA1424 918 AAKEGWLHFRPlvtdkgkrvggSIRPWKQMYVVLRGHSLYLYKDKRe 964 ....kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqaeseee ++++++ i+++ + +++ + +krkn+F+++t+d + l+qae+ ++ KIAA1424 965 qttpSEEEQPISVNACLIDISYSEtKRKNVFRLTTsDC-ECLFQAEDRDD 1013 rkeWvkaiqsair<-* + W+k iq+++ KIAA1424 1014 MLAWIKTIQESSN 1026 PF00620.17.fs: domain 1 of 1, from 1148 to 1301: score 242.8, E = 2.5e-71 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl. Pliv+ C+ +e+rGL+ GIyRv+G+ ++i ++e++++g+++ + KIAA1424 1148 PLIVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDi 1194 ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle +d+++ d +v++slLK F+R+LPePL+t++ y +fie a ++ed+ +rl+ KIAA1424 1195 QDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYADFIE-ANRKEDPLDRLK 1243 alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl l++l++ LP+++++tL++L ahL+ Va+nse+NkM ++NLAivFgPtL+ KIAA1424 1244 TLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVFGPTLV 1293 rppdgdsad<-* r++++ +++ KIAA1424 1294 RTSED-NMT 1301 PF00620.17.ls: domain 1 of 1, from 1148 to 1301: score 244.7, E = 1.8e-70 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl. Pliv+ C+ +e+rGL+ GIyRv+G+ ++i ++e++++g+++ + KIAA1424 1148 PLIVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDi 1194 ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle +d+++ d +v++slLK F+R+LPePL+t++ y +fie a ++ed+ +rl+ KIAA1424 1195 QDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYADFIE-ANRKEDPLDRLK 1243 alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl l++l++ LP+++++tL++L ahL+ Va+nse+NkM ++NLAivFgPtL+ KIAA1424 1244 TLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVFGPTLV 1293 rppdgdsad<-* r++++ +++ KIAA1424 1294 RTSED-NMT 1301 //