hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02340662/chunk_1/iprscan-20080502-02340662.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1427 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 60.2 2.6e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 316 432 .. 1 92 [] 60.2 2.6e-13 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 316 to 432: score 60.2, E = 2.6e-13 *->tLtvkiisArnLp..........DPYVkvs...........kTkvvk +L v +i+A+nL ++ ++ ++D Vkv+ +++ ++ ++++Tk k KIAA1427 316 RLLVVLIKAKNLHsnqskellgkDVSVKVTlkhqarklkkkQTKRAK 362 ktlsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrv + NPvWnE +++Fe+p++ + s++e+eV ++++ + +G++ KIAA1427 363 HKI---NPVWNE---MIMFELPDdllqaSsVELEVLGQddsgqsCALGHC 406 tippnnahqhsadg.lihlsell.ggrh.kl<-* +++ h++ ++++h++e+l+++r++ KIAA1427 407 SLG-----LHTSGSeRSHWEEMLkNPRRqIA 432 //