hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02405391/chunk_1/iprscan-20080502-02405391.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1431 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 429.7 3.6e-126 14 PF00096.16.fs Zinc finger, C2H2 type 411.6 1e-120 15 PF01352.17.ls KRAB box 142.6 9.9e-40 2 PF01352.17.fs KRAB box 138.7 6.9e-39 2 PF01096.9.fs Transcription factor S-II (TFIIS) 44.2 5.4e-13 12 PF01286.9.fs XPA protein N-terminal 46.4 1.8e-12 9 PF08790.1.fs LYAR-type C2HC zinc finger 21.5 2e-05 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/2 126 166 .. 1 41 [] 102.7 1.4e-28 PF01352.17.ls 1/2 126 166 .. 1 41 [] 104.7 2.6e-28 PF01352.17.ls 2/2 255 291 .. 1 41 [] 37.9 3.2e-08 PF01352.17.fs 2/2 255 291 .. 1 41 [] 36.0 1.8e-09 PF00096.16.fs 1/15 443 465 .. 1 24 [] 34.4 2.5e-07 PF00096.16.ls 1/14 443 465 .. 1 24 [] 36.4 9.2e-08 PF00096.16.fs 2/15 471 493 .. 1 24 [] 25.5 4.3e-05 PF00096.16.ls 2/14 471 493 .. 1 24 [] 27.4 4.6e-05 PF00096.16.fs 3/15 499 522 .. 1 24 [] 24.0 9.7e-05 PF00096.16.ls 3/14 499 522 .. 1 24 [] 26.0 0.00012 PF00096.16.ls 4/14 528 550 .. 1 24 [] 23.9 0.00053 PF00096.16.ls 5/14 556 578 .. 1 24 [] 31.6 2.5e-06 PF00096.16.fs 5/15 556 578 .. 1 24 [] 29.7 3.8e-06 PF00096.16.fs 6/15 584 606 .. 1 24 [] 29.8 3.5e-06 PF00096.16.ls 6/14 584 606 .. 1 24 [] 31.8 2.2e-06 PF00096.16.ls 7/14 612 634 .. 1 24 [] 34.2 4.3e-07 PF00096.16.fs 7/15 612 634 .. 1 24 [] 32.2 9e-07 PF00096.16.ls 8/14 640 662 .. 1 24 [] 33.5 7e-07 PF00096.16.fs 8/15 640 662 .. 1 24 [] 31.5 1.3e-06 PF00096.16.fs 9/15 668 690 .. 1 24 [] 32.1 9.6e-07 PF00096.16.ls 9/14 668 690 .. 1 24 [] 34.0 4.7e-07 PF00096.16.ls 10/14 696 718 .. 1 24 [] 35.6 1.5e-07 PF00096.16.fs 10/15 696 718 .. 1 24 [] 33.7 3.8e-07 PF00096.16.ls 11/14 724 746 .. 1 24 [] 24.3 0.00039 PF00096.16.ls 12/14 752 774 .. 1 24 [] 27.5 4.4e-05 PF00096.16.fs 12/15 752 774 .. 1 24 [] 25.5 4.1e-05 PF00096.16.fs 13/15 780 802 .. 1 24 [] 33.2 4.9e-07 PF00096.16.ls 13/14 780 802 .. 1 24 [] 35.2 2.1e-07 PF00096.16.fs 14/15 808 830 .. 1 24 [] 26.3 2.6e-05 PF00096.16.ls 14/14 808 830 .. 1 24 [] 28.3 2.6e-05 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 2, from 126 to 166: score 102.7, E = 1.4e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaVdF+qEEWe+L+p QrnLYr+VMlENy+nL+Slg KIAA1431 126 VTFGDVAVDFSQEEWEWLNPIQRNLYRKVMLENYRNLASLG 166 PF01352.17.ls: domain 1 of 2, from 126 to 166: score 104.7, E = 2.6e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaVdF+qEEWe+L+p QrnLYr+VMlENy+nL+Slg KIAA1431 126 VTFGDVAVDFSQEEWEWLNPIQRNLYRKVMLENYRNLASLG 166 PF01352.17.ls: domain 2 of 2, from 255 to 291: score 37.9, E = 3.2e-08 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* Vt + aVdF q+ L+paQ+n++++ ++EN s+L S g KIAA1431 255 VTIKNLAVDFRQQ----LHPAQKNFCKNGIWENNSDLGSAG 291 PF01352.17.fs: domain 2 of 2, from 255 to 291: score 36.0, E = 1.8e-09 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* Vt + aVdF q+ L+paQ+n++++ ++EN s+L S g KIAA1431 255 VTIKNLAVDFRQQ----LHPAQKNFCKNGIWENNSDLGSAG 291 PF00096.16.fs: domain 1 of 15, from 443 to 465: score 34.4, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+k+F+++s+L+ H+r+H KIAA1431 443 FKCN-ECKKTFTQSSSLTVHQRIH 465 PF00096.16.ls: domain 1 of 14, from 443 to 465: score 36.4, E = 9.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+k+F+++s+L+ H+r+H KIAA1431 443 FKCN-ECKKTFTQSSSLTVHQRIH 465 PF00096.16.fs: domain 2 of 15, from 471 to 493: score 25.5, E = 4.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s++ rH+r H KIAA1431 471 YKCN-ECGKAFSDGSSFARHQRCH 493 PF00096.16.ls: domain 2 of 14, from 471 to 493: score 27.4, E = 4.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s++ rH+r H KIAA1431 471 YKCN-ECGKAFSDGSSFARHQRCH 493 PF00096.16.fs: domain 3 of 15, from 499 to 522: score 24.0, E = 9.7e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C +Cgk+F ++ +L rH+r H KIAA1431 499 YECI-ECGKAFIQNTSLIRHWRYyH 522 PF00096.16.ls: domain 3 of 14, from 499 to 522: score 26.0, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C +Cgk+F ++ +L rH+r H KIAA1431 499 YECI-ECGKAFIQNTSLIRHWRYyH 522 PF00096.16.ls: domain 4 of 14, from 528 to 550: score 23.9, E = 0.00053 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C dCgk+Fs++ L++H+r+H KIAA1431 528 FDCI-DCGKAFSDHIGLNQHRRIH 550 PF00096.16.ls: domain 5 of 14, from 556 to 578: score 31.6, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+ksF+ s+L+ H+r+H KIAA1431 556 YKCD-VCHKSFRYGSSLTVHQRIH 578 PF00096.16.fs: domain 5 of 15, from 556 to 578: score 29.7, E = 3.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+ksF+ s+L+ H+r+H KIAA1431 556 YKCD-VCHKSFRYGSSLTVHQRIH 578 PF00096.16.fs: domain 6 of 15, from 584 to 606: score 29.8, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs++++L++H+r+H KIAA1431 584 YECD-VCRKAFSHHASLTQHQRVH 606 PF00096.16.ls: domain 6 of 14, from 584 to 606: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs++++L++H+r+H KIAA1431 584 YECD-VCRKAFSHHASLTQHQRVH 606 PF00096.16.ls: domain 7 of 14, from 612 to 634: score 34.2, E = 4.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+++ +L +Hlr+H KIAA1431 612 FKCK-ECGKAFRQNIHLASHLRIH 634 PF00096.16.fs: domain 7 of 15, from 612 to 634: score 32.2, E = 9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+++ +L +Hlr+H KIAA1431 612 FKCK-ECGKAFRQNIHLASHLRIH 634 PF00096.16.ls: domain 8 of 14, from 640 to 662: score 33.5, E = 7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksFs +s+L +H+r+H KIAA1431 640 FECA-ECGKSFSISSQLATHQRIH 662 PF00096.16.fs: domain 8 of 15, from 640 to 662: score 31.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksFs +s+L +H+r+H KIAA1431 640 FECA-ECGKSFSISSQLATHQRIH 662 PF00096.16.fs: domain 9 of 15, from 668 to 690: score 32.1, E = 9.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F++k++L +H++tH KIAA1431 668 YECK-VCSKAFTQKAHLAQHQKTH 690 PF00096.16.ls: domain 9 of 14, from 668 to 690: score 34.0, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F++k++L +H++tH KIAA1431 668 YECK-VCSKAFTQKAHLAQHQKTH 690 PF00096.16.ls: domain 10 of 14, from 696 to 718: score 35.6, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ +L +H+r+H KIAA1431 696 YECK-ECGKAFSQTTHLIQHQRVH 718 PF00096.16.fs: domain 10 of 15, from 696 to 718: score 33.7, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ +L +H+r+H KIAA1431 696 YECK-ECGKAFSQTTHLIQHQRVH 718 PF00096.16.ls: domain 11 of 14, from 724 to 746: score 24.3, E = 0.00039 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F ++s+ ++H+r H KIAA1431 724 YKCM-ECGKAFGDNSSCTQHQRLH 746 PF00096.16.ls: domain 12 of 14, from 752 to 774: score 27.5, E = 4.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++ks+L H+r+H KIAA1431 752 YECI-ECGKAFKTKSSLICHRRSH 774 PF00096.16.fs: domain 12 of 15, from 752 to 774: score 25.5, E = 4.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++ks+L H+r+H KIAA1431 752 YECI-ECGKAFKTKSSLICHRRSH 774 PF00096.16.fs: domain 13 of 15, from 780 to 802: score 33.2, E = 4.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L H+r+H KIAA1431 780 YECS-VCGKAFSHRQSLSVHQRIH 802 PF00096.16.ls: domain 13 of 14, from 780 to 802: score 35.2, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L H+r+H KIAA1431 780 YECS-VCGKAFSHRQSLSVHQRIH 802 PF00096.16.fs: domain 14 of 15, from 808 to 830: score 26.3, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F + ++L++H+r+H KIAA1431 808 YECK-ECRKTFIQIGHLNQHKRVH 830 PF00096.16.ls: domain 14 of 14, from 808 to 830: score 28.3, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F + ++L++H+r+H KIAA1431 808 YECK-ECRKTFIQIGHLNQHKRVH 830 //