hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02491005/chunk_1/iprscan-20080502-02491005.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1436 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00047.15.ls Immunoglobulin domain 87.1 5e-23 5 PF00047.15.fs Immunoglobulin domain 79.9 3.6e-21 6 PF07686.7.fs Immunoglobulin V-set domain 71.8 9.9e-20 4 PF07686.7.ls Immunoglobulin V-set domain 59.2 1.3e-14 2 PF07679.6.fs Immunoglobulin I-set domain 20.7 1.9e-05 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.fs 1/4 66 186 .. 1 141 [] 38.4 2.4e-10 PF07686.7.ls 1/2 66 186 .. 1 141 [] 40.3 6.1e-09 PF00047.15.fs 1/6 81 166 .. 1 65 [] 16.1 0.0011 PF00047.15.ls 1/5 81 166 .. 1 65 [] 18.1 0.03 PF00047.15.fs 2/6 207 294 .. 1 65 [] 16.5 0.00088 PF00047.15.ls 2/5 207 294 .. 1 65 [] 18.5 0.022 PF07686.7.fs 3/4 321 421 .. 1 125 [. 22.3 7.7e-06 PF07686.7.ls 2/2 321 449 .. 1 141 [] 18.8 0.00062 PF00047.15.fs 3/6 337 420 .. 1 65 [] 16.6 0.00083 PF00047.15.ls 3/5 337 420 .. 1 65 [] 18.6 0.021 PF00047.15.ls 4/5 467 562 .. 1 65 [] 26.1 0.00012 PF00047.15.fs 4/6 467 562 .. 1 65 [] 24.1 7.4e-06 Alignments of top-scoring domains: PF07686.7.fs: domain 1 of 4, from 66 to 186: score 38.4, E = 2.4e-10 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +v p++ ++ ++G+ + +pC +s ++d++ KIAA1436 66 GRVVRV-PTA------------TLVRVVGTELVIPCNVS-DYDGP-- 96 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls +++++ W++ ++g++ +++ s + +++ + ++er++ l KIAA1436 97 --SEQNFDWSF-SSLGSSFVELA----STWEVGFPAQLYQERLQRGEILL 139 gnpskgdfsLtIsnlqlsDsGtYyCavsns...nelvfgggtrLtVl<-* + + ++ + L+I+n+q+sD G Y C +++ + ++++ +++ Vl KIAA1436 140 RRTANDAVELHIKNVQPSDQGHYKCSTPSTdatVQGNYEDTVQVKVL 186 PF07686.7.ls: domain 1 of 2, from 66 to 186: score 40.3, E = 6.1e-09 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +v p++ ++ ++G+ + +pC +s ++d++ KIAA1436 66 GRVVRV-PTA------------TLVRVVGTELVIPCNVS-DYDGP-- 96 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls +++++ W++ ++g++ +++ s + +++ + ++er++ l KIAA1436 97 --SEQNFDWSF-SSLGSSFVELA----STWEVGFPAQLYQERLQRGEILL 139 gnpskgdfsLtIsnlqlsDsGtYyCavsns...nelvfgggtrLtVl<-* + + ++ + L+I+n+q+sD G Y C +++ + ++++ +++ Vl KIAA1436 140 RRTANDAVELHIKNVQPSDQGHYKCSTPSTdatVQGNYEDTVQVKVL 186 PF00047.15.fs: domain 1 of 6, from 81 to 166: score 16.1, E = 0.0011 *->GesvtLtCsvs.gfgppdvtvtWlrngk.lt.gvlvtssenngdsty G + ++C vs+ gp++ ++ W + + + +l+ + e + + KIAA1436 81 GTELVIPCNVSdYDGPSEQNFDWSFSSLgSSfVELASTWEVGFPAQL 127 qt..................sLtitnvtpeDggtYtCvv<-* ++++ ++++ +++ ++ L+i+nv+p+D g Y+C KIAA1436 128 YQerlqrgeillrrtandavELHIKNVQPSDQGHYKCST 166 PF00047.15.ls: domain 1 of 5, from 81 to 166: score 18.1, E = 0.03 *->GesvtLtCsvs.gfgppdvtvtWlrngk.lt.gvlvtssenngdsty G + ++C vs+ gp++ ++ W + + + +l+ + e + + KIAA1436 81 GTELVIPCNVSdYDGPSEQNFDWSFSSLgSSfVELASTWEVGFPAQL 127 qt..................sLtitnvtpeDggtYtCvv<-* ++++ ++++ +++ ++ L+i+nv+p+D g Y+C KIAA1436 128 YQerlqrgeillrrtandavELHIKNVQPSDQGHYKCST 166 PF00047.15.fs: domain 2 of 6, from 207 to 294: score 16.5, E = 0.00088 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge++ L+C++ + +p ++++ +l + ++ + +v +++g+ ++ KIAA1436 207 GEPFELRCTAASASPLHTHLALLWEVHrGPaRRSVLALTHEGRFHPG 253 t.....................sLtitnvtpeDggtYtCvv<-* + +++ ++++ + ++ +++ +L+++++ + D g+Y+C v KIAA1436 254 LgyeqryhsgdvrldtvgsdayRLSVSRALSADQGSYRCIV 294 PF00047.15.ls: domain 2 of 5, from 207 to 294: score 18.5, E = 0.022 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge++ L+C++ + +p ++++ +l + ++ + +v +++g+ ++ KIAA1436 207 GEPFELRCTAASASPLHTHLALLWEVHrGPaRRSVLALTHEGRFHPG 253 t.....................sLtitnvtpeDggtYtCvv<-* + +++ ++++ + ++ +++ +L+++++ + D g+Y+C v KIAA1436 254 LgyeqryhsgdvrldtvgsdayRLSVSRALSADQGSYRCIV 294 PF07686.7.fs: domain 3 of 4, from 321 to 421: score 22.3, E = 7.7e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +s++ + p+ v+vaeG+ + L+C + +d+ KIAA1436 321 PSVLRAAVPK------------NVSVAEGKELDLTCNIT---TDRAD 352 ssgtfsiyWyrqqpp....gkgpeliiisyysyystsegngtvgerfkgr + ++ +++W++ + ++++ +g + ++ + +++ + +++ KIAA1436 353 DVRP-EVTWSF-SRMpdstLPGSRVLA-----RLDRD------SLVHSSP 389 vtlsgnpskgdfsLtIsnlqlsDsGtYyCavs<-* ++ + +++L ++++ + sG YyC+vs KIAA1436 390 HVALSHVDARSYHLLVRDVSKENSGYYYCHVS 421 PF07686.7.ls: domain 2 of 2, from 321 to 449: score 18.8, E = 0.00062 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +s++ + p+ v+vaeG+ + L+C + +d+ KIAA1436 321 PSVLRAAVPK------------NVSVAEGKELDLTCNIT---TDRAD 352 ssgtfsiyWyrqqpp....gkgpeliiisyysyystsegngtvgerfkgr + ++ +++W++ + ++++ +g + ++ + +++ + +++ KIAA1436 353 DVRP-EVTWSF-SRMpdstLPGSRVLA-----RLDRD------SLVHSSP 389 vtlsgnpskgdfsLtIsnlqlsDsGtYyCavsns............nelv ++ + +++L ++++ + sG YyC+vs ++++++ ++ + ++ KIAA1436 390 HVALSHVDARSYHLLVRDVSKENSGYYYCHVSLWapghnrswhkvaEAVS 439 fgggtrLtVl<-* +g+ +t l KIAA1436 440 SPAGVGVTWL 449 PF00047.15.fs: domain 3 of 6, from 337 to 420: score 16.6, E = 0.00083 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst G+ + LtC +++ ++ ++vtW + + + +++ + ++ + KIAA1436 337 GKELDLTCNITtdRADDVRPEVTWSFSRMpDStLPGSRVLARLDRDS 383 yqt...............sLtitnvtpeDggtYtCvv<-* ++++ ++ + ++ +L +++v++e +g+Y+C+v KIAA1436 384 LVHssphvalshvdarsyHLLVRDVSKENSGYYYCHV 420 PF00047.15.ls: domain 3 of 5, from 337 to 420: score 18.6, E = 0.021 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst G+ + LtC +++ ++ ++vtW + + + +++ + ++ + KIAA1436 337 GKELDLTCNITtdRADDVRPEVTWSFSRMpDStLPGSRVLARLDRDS 383 yqt...............sLtitnvtpeDggtYtCvv<-* ++++ ++ + ++ +L +++v++e +g+Y+C+v KIAA1436 384 LVHssphvalshvdarsyHLLVRDVSKENSGYYYCHV 420 PF00047.15.ls: domain 4 of 5, from 467 to 562: score 26.1, E = 0.00012 *->GesvtLtCsvs....gfgppdvtvtWlrngk.lt.gvlvt..ssenn ++ L C+v ++++g++++ tv+W+ + + v++ + +++ KIAA1436 467 DDPTELACRVVdtksGEANVRFTVSWYYRMNrRSdNVVTSelLAVMD 513 gdstyqt.......................sLtitnvtpeDggtYtCvv< gd+t ++++++++ ++++ +++++++ ++i+++t+eD g+Y+Cvv KIAA1436 514 GDWTLKYgerskqraqdgdfifskehtdtfNFRIQRTTEEDRGNYYCVV 562 -* KIAA1436 - - PF00047.15.fs: domain 4 of 6, from 467 to 562: score 24.1, E = 7.4e-06 *->GesvtLtCsvs....gfgppdvtvtWlrngk.lt.gvlvt..ssenn ++ L C+v ++++g++++ tv+W+ + + v++ + +++ KIAA1436 467 DDPTELACRVVdtksGEANVRFTVSWYYRMNrRSdNVVTSelLAVMD 513 gdstyqt.......................sLtitnvtpeDggtYtCvv< gd+t ++++++++ ++++ +++++++ ++i+++t+eD g+Y+Cvv KIAA1436 514 GDWTLKYgerskqraqdgdfifskehtdtfNFRIQRTTEEDRGNYYCVV 562 -* KIAA1436 - - //