hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02491005/chunk_1/iprscan-20080502-02491005.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1436 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 171.8 6.8e-47 6 SM00406 46.3 4e-09 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/6 73 186 .. 1 58 [] 40.9 1.7e-07 SM00406 1/3 83 166 .. 1 76 [] 36.9 2.6e-06 SM00409 2/6 199 315 .. 1 58 [] 26.6 0.0035 SM00409 3/6 329 435 .. 1 58 [] 38.1 1.2e-06 SM00406 2/3 339 420 .. 1 76 [] 8.1 0.45 SM00409 4/6 459 577 .. 1 58 [] 24.3 0.017 SM00406 3/3 469 562 .. 1 76 [] 1.3 2.2 SM00409 5/6 601 721 .. 1 58 [] 20.2 0.29 SM00409 6/6 741 867 .. 1 58 [] 21.7 0.1 Alignments of top-scoring domains: SM00409: domain 1 of 6, from 73 to 186: score 40.9, E = 1.7e-07 *->pp.vtvkeGesvtLtC.as........titWy............... +++ ++G ++++C++s+ ++++ ++ W+ ++ +++ ++ KIAA1436 73 TAtLVRVVGTELVIPCnVSdydgpseqNFDWSfsslgssfvelastw 119 .............................LtI.nvtpeDsesgGtYtCaa + + + + + +++ +++ ++ L+I+nv+p+D+ G Y C KIAA1436 120 evgfpaqlyqerlqrgeillrrtandaveLHIkNVQPSDQ---GHYKCST 166 t......sgsasseqgttLtVl<-* +++ + g+++ +++++Vl KIAA1436 167 PstdatvQGNYED--TVQVKVL 186 SM00406: domain 1 of 3, from 83 to 166: score 36.9, E = 2.6e-06 *->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy....... + ++C +S ++ ++++++ W + + + +e+ + + + + KIAA1436 83 ELVIPCNVSDYDGpseqNFDWSFSSL----GSSFVELASTwevgfpa 125 .sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* + y++R++ l r+++ v L+i+n++p+D+g Y C++ KIAA1436 126 qLYQERLQRGEILLRRTANDAVELHIKNVQPSDQGHYKCST 166 SM00409: domain 2 of 6, from 199 to 315: score 26.6, E = 0.0035 *->pp.vtvkeGesvtLtC.as.........titWy.............. pp+++ +eGe+ +L+C+a++ ++ +++ + W ++++ +++ + KIAA1436 199 PPsLSLREGEPFELRCtAAsasplhthlALLWEvhrgparrsvlalt 245 ...............................LtI.nvtpeDsesgGtYtC + ++ +++ + ++ ++++ + ++ +++ +L ++++ +D+ G Y+C KIAA1436 246 hegrfhpglgyeqryhsgdvrldtvgsdayrLSVsRALSADQ---GSYRC 292 aat.......sgsasseqgttLtVl<-* ++ ++ + + + ++V KIAA1436 293 IVSewiaeqgNWQEIQ--EKAVEVA 315 SM00409: domain 3 of 6, from 329 to 435: score 38.1, E = 1.2e-06 *->pp.vtvkeGesvtLtC.as.........titWy.............. p++v+v eG + LtC+++++ ++ +++tW+ ++ ++++ ++++ KIAA1436 329 PKnVSVAEGKELDLTCnITtdraddvrpEVTWSfsrmpdstlpgsrv 375 ...........................LtI.nvtpeDsesgGtYtCaat. + ++++ +++++ ++ + ++ +L +++v++e+s G Y+C ++ KIAA1436 376 larldrdslvhssphvalshvdarsyhLLVrDVSKENS---GYYYCHVSl 422 sgsasseqgttLtVl<-* + ++ + +V KIAA1436 423 WAPGHN--RSWHKVA 435 SM00406: domain 2 of 3, from 339 to 420: score 8.1, E = 0.45 *->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy.... + L+C +++ ++ +++ ++s+ r p ++ g +l++ +++ KIAA1436 339 ELDLTCNITTDRAddvrpevTWSFSRMPD---STLPGSRVLARldrd 382 ...sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* + ++ v +s + ++ +L +++ e +g+YyC + KIAA1436 383 slvHSSPHVALSHV-----DARSYHLLVRDVSKENSGYYYCHV 420 SM00409: domain 4 of 6, from 459 to 577: score 24.3, E = 0.017 *->pp.vtvkeGesvtLtC.as...........titWy............ ++v + + ++ +L C++ +++++ + t++Wy + ++++++ + KIAA1436 459 ASkVPGFADDPTELACrVVdtksgeanvrfTVSWYyrmnrrsdnvvt 505 .......................................LtI.nvtpeDs + +++ + + + +++++ ++++ ++ ++++ +++I++ t+eD KIAA1436 506 sellavmdgdwtlkygerskqraqdgdfifskehtdtfnFRIqRTTEEDR 555 esgGtYtCaat.sgsasseqgttLtVl<-* G+Y+C+++ + ++ + +++ + KIAA1436 556 ---GNYYCVVSaWTKQRN--NSWVKSK 577 SM00406: domain 3 of 3, from 469 to 562: score 1.3, E = 2.2 *->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy.... +L C++ ++++ + + +vsW++ + ++ + e+l++ +++ KIAA1436 469 PTELACRVVDTKSgeanvrfTVSWYYRMNRRSDNVVTSELLAVmdgd 515 ............sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyC + + +++++++ g + +sk ++ ++i++ + eD g+YyC KIAA1436 516 wtlkygerskqrAQDGDFIFSKE-----HTDTFNFRIQRTTEEDRGNYYC 560 ar<-* + KIAA1436 561 VV 562 SM00409: domain 5 of 6, from 601 to 721: score 20.2, E = 0.29 *->pp.vtvkeGesvtLtC.as.......titWy................ +p+ +G + ++tC++s+++ ++++++ + ++ ++ ++++ + KIAA1436 601 QPkPFFAAGNTFEMTCkVSsknikspRYSVLimaekpvgdlsspnet 647 .....................................LtI.nvtpeDses + + ++++ + + ++ ++ ++ + + + + ++ + +++D+ KIAA1436 648 kyiisldqdsvvklenwtdasrvdgvvlekvqedefrYRMyQTQVSDA-- 695 gGtYtCaat.....sgsasseqgttLtVl<-* G Y+C++t ++ gs + ++ + + KIAA1436 696 -GLYRCMVTawspvRGSLWR--EAATSLS 721 SM00409: domain 6 of 6, from 741 to 867: score 21.7, E = 0.1 *->pp.vtvkeGesvtLtC.as.............titWy.......... + + +v +G+ ++L C ++ + ++++ ++W+ ++ + ++ KIAA1436 741 SDtPSVIRGDLIKLFCiITvegaaldpddmafDVSWFavhsfgldka 787 ...................................LtI.nvtpeDsesgG + ++ ++++ ++++++ +++ + + + L++++ + +D G KIAA1436 788 pvllssldrkgivttsrrdwksdlslervsvleflLQVhGSEDQDF---G 834 tYtCaat............sgsasseqgttLtVl<-* +Y+C +t+ ++++++ + +++s +++ +tV+ KIAA1436 835 NYYCSVTpwvksptgswqkEAEIHS-KPVFITVK 867 //