# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg03469a.fasta.huge -Q ../query/KIAA1444.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1444, 416 aa
 vs ./tmplib.24314 library

1987089 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.0249+/-0.00757; mu= 0.9314+/- 0.515
 mean_var=217.2738+/-50.675, 0's: 0 Z-trim: 4  B-trim: 9 in 1/39
 Lambda= 0.087010

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1095  ( 1098 res)   hk06736                    (1098) 1233 167.2 4.2e-42


>>KIAA1095  ( 1098 res)   hk06736                         (1098 aa)
 initn: 909 init1: 559 opt: 1233  Z-score: 847.7  bits: 167.2 E(): 4.2e-42
Smith-Waterman score: 1233;  49.878% identity (76.156% similar) in 411 aa overlap (1-406:453-850)

                                             10        20        30
KIAA14                               ELYKSSHRDKLGLMVCYRTDDEEDLGIYVG
                                     .::. . .::::: ::::::::.:.:::..
KIAA10 PSAHEYYDPNDYIGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYIS
            430       440       450       460       470       480  

               40        50        60        70        80        90
KIAA14 EVNPNSIAAKDGRIREGDRIIQINGVDVQNREEAVAILSQEENTNISLLVARPESQLAKR
       :..::::::::::::::::::::::..:::::::::.:..::: :.:::.:::: :: . 
KIAA10 EIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEG
            490       500       510       520       530       540  

              100         110       120       130       140        
KIAA14 WKDSDRDDFLDDFGSE--NEGELRARKLKSPPAQQPGNEEEKGAPDAGPGLSNSQELDSG
       : :.::.:::::.  .  .: . .: .. .   ::  ..:. :. :..  :::..: :::
KIAA10 WMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHDEDGGTTDTATILSNQHEKDSG
            550       560       570       580       590       600  

      150       160       170       180       190       200        
KIAA14 VGRTDESTRNEESSEHDLLGDEPPSSTNTPGSLRKFGLQGDALQSRDFHFSMDSLLAEGA
       ::::::::::.::::..  ::.  .:.:  .. ::.  . :.: : :. :: .:...  :
KIAA10 VGRTDESTRNDESSEQENNGDDATASSNPLAGQRKLTCSQDTLGSGDLPFSNESFIS--A
            610       620       630       640       650         660

      210       220       230       240       250       260        
KIAA14 GLGGGDVPGLTDEEYERYRELLEIKCHLENGNQLGLLFPRASGGNSALDVNRN--ESLGH
           .:  :.  .: ::.:::::.::......  :: .:  ::    ::....  ::. .
KIAA10 DCTDADYLGIPVDECERFRELLELKCQVKSATPYGLYYP--SG---PLDAGKSDPESVDK
              670       680       690         700          710     

        270       280       290       300       310        320     
KIAA14 EMAMLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAAS-EPKKHELSDI
       :. .:.:::: .:..: .:.::.:::::.:.  ..:.:.. .. .  .: . ..::::::
KIAA10 ELELLNEELRSIELECLSIVRAHKMQQLKEQYRESWMLHNSGFRNYNTSIDVRRHELSDI
         720       730       740       750       760       770     

         330       340       350       360       370       380     
KIAA14 SELPEKSDKDSTSAYNTGESCRSTPLLVEPLPESPLRRAMAGNSNLNRTPPGPAVATPAK
       .::::::::::.:::::::::::::: .:  :.. ::::  : :      :.   :. . 
KIAA10 TELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLRRAAEGISC-----PSSEGAVGTT
         780       790       800       810       820            830

         390       400       410                                   
KIAA14 AAPPPGSPAKFRSLSRDPEAGRRQHAEERGR                             
        :  :.:  .. :...:::.:                                       
KIAA10 EAYGPASK-NLLSITEDPEVGTPTYSPSLKELDPNQPLESKERRASDGSRSPTPSQKLGS
               840       850       860       870       880         




416 residues in 1 query   sequences
1987089 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:42 2008 done: Thu Dec 18 15:22:43 2008
 Total Scan time:  0.410 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]