hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03023077/chunk_1/iprscan-20080502-03023077.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1444 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 59.3 5.3e-16 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 61.2 3e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.fs 1/1 1 81 [. 1 86 [] 59.3 5.3e-16 PF00595.14.ls 1/1 1 81 [. 1 86 [] 61.2 3e-15 Alignments of top-scoring domains: PF00595.14.fs: domain 1 of 1, from 1 to 81: score 59.3, E = 5.3e-16 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL e+ ++ r +lG+++ +d++ d gi+v ev+p+ + A+++Gr+ KIAA1444 1 ELYKSS--HRDKLGLMVCYRTDDEEDLGIYVGEVNPN-SIAAKDGRI 44 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I+++NG+d+ n +e ++++ ++ ++ ++L+v+ KIAA1444 45 REGDRIIQINGVDVQNR-EEAVAILSQEENT-NISLLVA 81 PF00595.14.ls: domain 1 of 1, from 1 to 81: score 61.2, E = 3e-15 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL e+ ++ r +lG+++ +d++ d gi+v ev+p+ + A+++Gr+ KIAA1444 1 ELYKSS--HRDKLGLMVCYRTDDEEDLGIYVGEVNPN-SIAAKDGRI 44 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I+++NG+d+ n +e ++++ ++ ++ ++L+v+ KIAA1444 45 REGDRIIQINGVDVQNR-EEAVAILSQEENT-NISLLVA 81 //