hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03040808/chunk_1/iprscan-20080502-03040808.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1445 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 687.0 1.3e-203 1 PF01403.10.fs Sema domain 685.0 5e-203 1 PF00090.9.fs Thrombospondin type 1 domain 185.4 3.7e-55 6 PF00090.9.ls Thrombospondin type 1 domain 187.1 3.9e-53 5 PF01437.15.fs Plexin repeat 60.7 2.9e-19 1 PF01437.15.ls Plexin repeat 62.4 1.3e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.ls 1/1 177 588 .. 1 490 [] 687.0 1.3e-203 PF01403.10.fs 1/1 177 588 .. 1 490 [] 685.0 5e-203 PF01437.15.fs 1/1 606 653 .. 1 63 [] 60.7 2.9e-19 PF01437.15.ls 1/1 606 653 .. 1 63 [] 62.4 1.3e-15 PF00090.9.ls 1/5 719 770 .. 1 55 [] 55.2 2e-13 PF00090.9.fs 2/6 719 770 .. 1 55 [] 53.3 2.2e-15 PF00090.9.ls 2/5 777 821 .. 1 55 [] 30.5 5.5e-06 PF00090.9.fs 3/6 777 821 .. 1 55 [] 28.7 5.5e-08 PF00090.9.ls 3/5 908 958 .. 1 55 [] 48.5 2.1e-11 PF00090.9.fs 4/6 908 958 .. 1 55 [] 46.6 2.3e-13 PF00090.9.ls 4/5 965 1015 .. 1 55 [] 33.9 5.3e-07 PF00090.9.fs 5/6 965 1015 .. 1 55 [] 32.0 5.7e-09 PF00090.9.fs 6/6 1020 1060 .. 1 49 [. 22.3 4.6e-06 PF00090.9.ls 5/5 1020 1060 .. 1 55 [] 19.1 0.0003 Alignments of top-scoring domains: PF01403.10.ls: domain 1 of 1, from 177 to 588: score 687.0, E = 1.3e-203 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek f+ l ld+ +++L VGArN++++L+l++ s++ q+++W+ss e++ KIAA1445 177 FSQLALDPSGNQLIVGARNYLFRLSLANVSLL--QATEWASS--EDT 219 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +++C++kGk+ e+eCqN++rVL++ ++ ++++CGTnaF+P+Ct +++ KIAA1445 220 RRSCQSKGKT----EEECQNYVRVLIVAGR-KVFMCGTNAFSPMCTSRQV 264 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL g+ +s ++ek ++G +rCPydP+hnst+v+ ++ geL KIAA1445 265 GN-------------LSRTTEK-INGVARCPYDPRHNSTAVISSQ--GEL 298 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y++tv+D FsGrdpaI+Rslgs +plrT q++skwlnePnFV++y KIAA1445 299 YAATVID------FSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAY 342 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +i+ + YFF rE+ave++ cg+++ysRVaRvCknDvGGr++l KIAA1445 343 DIG-------LFAYFFLRENAVEHD--CGRTVYSRVARVCKNDVGGRFLL 383 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs e ++WTTF+KARLnCS+pG ++p fy+NeLQ++f+lp+ KIAA1445 384 E-DTWTTFMKARLNCSRPG--EVP-FYYNELQSAFHLPE----------- 418 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg +d +iYGVFtt++nsia+ SAVCaF++s+I q+F nGpf++q E+ KIAA1445 419 -QD-LIYGVFTTNVNSIAA----SAVCAFNLSAISQAF-NGPFRYQ--EN 459 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm p+ +wlp + P P+ +qC + + + ++ +++l++++l+++++ +Lm KIAA1445 460 PRAAWLPIAN---PIPN-FQCGTLPET--GP-NENLTERSLQDAQRLFLM 502 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt e+v+P++ P+++++sv r+ +++Vd V+a d +lY+Vl++GT++Gt KIAA1445 503 SEAVQPVTPEPCVTQDSV--RFSHLVVD-LVQAKD-TLYHVLYIGTESGT 548 vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-* +lK++ + srs ++ leel+v++++r eP ++l+i+++ KIAA1445 549 ILKALSTASRSLHgC----YLEELHVLPPGRREPLRSLRILHSA 588 PF01403.10.fs: domain 1 of 1, from 177 to 588: score 685.0, E = 5e-203 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek f+ l ld+ +++L VGArN++++L+l++ s++ q+++W+ss e++ KIAA1445 177 FSQLALDPSGNQLIVGARNYLFRLSLANVSLL--QATEWASS--EDT 219 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +++C++kGk+ e+eCqN++rVL++ ++ ++++CGTnaF+P+Ct +++ KIAA1445 220 RRSCQSKGKT----EEECQNYVRVLIVAGR-KVFMCGTNAFSPMCTSRQV 264 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL g+ +s ++ek ++G +rCPydP+hnst+v+ ++ geL KIAA1445 265 GN-------------LSRTTEK-INGVARCPYDPRHNSTAVISSQ--GEL 298 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y++tv+D FsGrdpaI+Rslgs +plrT q++skwlnePnFV++y KIAA1445 299 YAATVID------FSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAY 342 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +i+ + YFF rE+ave++ cg+++ysRVaRvCknDvGGr++l KIAA1445 343 DIG-------LFAYFFLRENAVEHD--CGRTVYSRVARVCKNDVGGRFLL 383 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs e ++WTTF+KARLnCS+pG ++p fy+NeLQ++f+lp+ KIAA1445 384 E-DTWTTFMKARLNCSRPG--EVP-FYYNELQSAFHLPE----------- 418 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg +d +iYGVFtt++nsia+ SAVCaF++s+I q+F nGpf++q E+ KIAA1445 419 -QD-LIYGVFTTNVNSIAA----SAVCAFNLSAISQAF-NGPFRYQ--EN 459 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm p+ +wlp + P P+ +qC + + + ++ +++l++++l+++++ +Lm KIAA1445 460 PRAAWLPIAN---PIPN-FQCGTLPET--GP-NENLTERSLQDAQRLFLM 502 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt e+v+P++ P+++++sv r+ +++Vd V+a d +lY+Vl++GT++Gt KIAA1445 503 SEAVQPVTPEPCVTQDSV--RFSHLVVD-LVQAKD-TLYHVLYIGTESGT 548 vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-* +lK++ + srs ++ leel+v++++r eP ++l+i+++ KIAA1445 549 ILKALSTASRSLHgC----YLEELHVLPPGRREPLRSLRILHSA 588 PF01437.15.fs: domain 1 of 1, from 606 to 653: score 60.7, E = 2.9e-19 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprsep +C++y+s ++CL+ardp yCgW++ ++rC++++ ++++ + KIAA1445 606 RCAAYRSQGACLGARDP-YCGWDGKQQRCSTLE-------DSSNMS- 643 endqwldwswssskCp<-* w++ Cp KIAA1445 644 ------LWTQNITACP 653 PF01437.15.ls: domain 1 of 1, from 606 to 653: score 62.4, E = 1.3e-15 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprsep +C++y+s ++CL+ardp yCgW++ ++rC++++ ++++ + KIAA1445 606 RCAAYRSQGACLGARDP-YCGWDGKQQRCSTLE-------DSSNMS- 643 endqwldwswssskCp<-* w++ Cp KIAA1445 644 ------LWTQNITACP 653 PF00090.9.ls: domain 1 of 5, from 719 to 770: score 55.2, E = 2e-13 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pWs W CS +CG G ++RqR+c +paP+ +gg C+g+ +e + KIAA1445 719 TPWSSWALCSTSCGIGFQVRQRSCSNPAPR-HGGRICVGKSRE--ER 762 aCdmmdkC<-* C++ +C KIAA1445 763 FCNENTPC 770 PF00090.9.fs: domain 2 of 6, from 719 to 770: score 53.3, E = 2.2e-15 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pWs W CS +CG G ++RqR+c +paP+ +gg C+g+ +e + KIAA1445 719 TPWSSWALCSTSCGIGFQVRQRSCSNPAPR-HGGRICVGKSRE--ER 762 aCdmmdkC<-* C++ +C KIAA1445 763 FCNENTPC 770 PF00090.9.ls: domain 2 of 5, from 777 to 821: score 30.5, E = 5.5e-06 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete W+ WS CS CG+G+++R+R c + g++C g +e ++ KIAA1445 777 ASWGSWSKCSSNCGGGMQSRRRACEN-------GNSCLGCGVE--FK 814 aCdmmdkC<-* C + + C KIAA1445 815 TC-NPEGC 821 PF00090.9.fs: domain 3 of 6, from 777 to 821: score 28.7, E = 5.5e-08 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete W+ WS CS CG+G+++R+R c + g++C g +e ++ KIAA1445 777 ASWGSWSKCSSNCGGGMQSRRRACEN-------GNSCLGCGVE--FK 814 aCdmmdkC<-* C + + C KIAA1445 815 TC-NPEGC 821 PF00090.9.ls: domain 3 of 5, from 908 to 958: score 48.5, E = 2.1e-11 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete W++WS+CS C G r+R+R+c +p+P+ gg pC+gd+ e + KIAA1445 908 AAWGPWSSCSRDCELGFRVRKRTCTNPEPR-NGGLPCVGDAAE--YQ 951 aCdmmdkC<-* C + + C KIAA1445 952 DC-NPQAC 958 PF00090.9.fs: domain 4 of 6, from 908 to 958: score 46.6, E = 2.3e-13 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete W++WS+CS C G r+R+R+c +p+P+ gg pC+gd+ e + KIAA1445 908 AAWGPWSSCSRDCELGFRVRKRTCTNPEPR-NGGLPCVGDAAE--YQ 951 aCdmmdkC<-* C + + C KIAA1445 952 DC-NPQAC 958 PF00090.9.ls: domain 4 of 5, from 965 to 1015: score 33.9, E = 5.3e-07 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggep.Ctgdvqelet s W+ WSpCS +CG+G+ +R+R+c spaP + ge+ C g ++e KIAA1445 965 SCWTSWSPCSASCGGGHYQRTRSCTSPAP--SPGEDiCLGLHTE--E 1007 eaCdmmdkC<-* C + C KIAA1445 1008 ALC-ATQAC 1015 PF00090.9.fs: domain 5 of 6, from 965 to 1015: score 32.0, E = 5.7e-09 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggep.Ctgdvqelet s W+ WSpCS +CG+G+ +R+R+c spaP + ge+ C g ++e KIAA1445 965 SCWTSWSPCSASCGGGHYQRTRSCTSPAP--SPGEDiCLGLHTE--E 1007 eaCdmmdkC<-* C + C KIAA1445 1008 ALC-ATQAC 1015 PF00090.9.fs: domain 6 of 6, from 1020 to 1060: score 22.3, E = 4.6e-06 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete spWseWS C+ G ++R R c P g++ C g+ + ++ KIAA1445 1020 SPWSEWSKCT---DDGAQSRSRHCEELLP---GSSACAGNSSQ--SR 1058 aC<-* +C KIAA1445 1059 PC 1060 PF00090.9.ls: domain 5 of 5, from 1020 to 1060: score 19.1, E = 0.0003 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete spWseWS C+ G ++R R c P g++ C g+ + ++ KIAA1445 1020 SPWSEWSKCT---DDGAQSRSRHCEELLP---GSSACAGNSSQ--SR 1058 aCdmmdkC<-* +C KIAA1445 1059 PC------ 1060 //