hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03040808/chunk_1/iprscan-20080502-03040808.nocrc
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Query sequence: KIAA1445
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00630                                                 599.6   1.1e-175   1
SM00209                                                 272.8    2.7e-77   5
SM00423                                                  53.7    2.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00630    1/1     177   588 ..     1   532 []   599.6 1.1e-175
SM00423    1/1     606   653 ..     1    56 []    53.7  2.3e-11
SM00209    1/5     718   771 ..     1    66 []    65.0  9.4e-15
SM00209    2/5     776   822 ..     1    66 []    51.9  8.2e-11
SM00209    3/5     907   959 ..     1    66 []    71.6    1e-16
SM00209    4/5     964  1016 ..     1    66 []    61.1  1.4e-13
SM00209    5/5    1019  1066 ..     1    66 []    23.1    0.028

Alignments of top-scoring domains:
SM00630: domain 1 of 1, from 177 to 588: score 599.6, E = 1.1e-175
                   *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps
                      f+ l+ld+ ++  +l+VGArN++++Lsl+n sl       ++ +w+s
    KIAA1445   177    FSQLALDPSGN--QLIVGARNYLFRLSLANVSL------LQATEWAS 215  

                   ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv
                   +e+      +++ C++kgk      e+eC+Ny+rvL+v  +     +++ 
    KIAA1445   216 SED------TRRSCQSKGK----T-EEECQNYVRVLIVAGR-----KVFM 249  

                   CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg
                   CGTnaf+P  +C+ +++g+l++                    +++++g +
    KIAA1445   250 CGTNAFSP--MCTSRQVGNLSR-------------------TTEKINGVA 278  

                   kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs
                   +CPydP+++st+v++       geLY++t++dfsg       +dp+i+Rs
    KIAA1445   279 RCPYDPRHNSTAVISSQ-----GELYAATVIDFSG-------RDPAIYRS 316  

                   lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipesgdgdfVYF
                   lg        + ++lrt +y+skw   lnepnFV+a++i     g f+YF
    KIAA1445   317 LG--------SGPPLRTAQYNSKW---LNEPNFVAAYDI-----GLFAYF 350  

                   FFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSFLKarL
                   F rE+ave+   dc+  ++v+sRVARvCknDvGG++lL++ Wt+F+KarL
    KIAA1445   351 FLRENAVEH---DCG--RTVYSRVARVCKNDVGGRFLLEDTWTTFMKARL 395  

                   nCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqgqq
                   nCs p  g+v+ fy+neLQ++f+lp+           +d++YgVF+    
    KIAA1445   396 NCSRP--GEVP-FYYNELQSAFHLPE-----------QDLIYGVFT---- 427  

                   tssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpvegnkv
                   t++    n+i  SAVCaF+l+ I ++Fn Gpf+ +e+p+ awlp   n++
    KIAA1445   428 TNV----NSIAASAVCAFNLSAISQAFN-GPFRYQENPRAAWLPIA-NPI 471  

                   PyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPltgrP
                   P++++Gt +        + + + +l+++ l+ +++ +Lm eav+P+t  P
    KIAA1445   472 PNFQCGTLP--------ETGPNENLTERSLQDAQRLFLMSEAVQPVTPEP 513  

                   llvktgtdyrlTsiaVdrvrgldGgkn.eytVlFlGTsdGrvlKvvvsrs
                     +++   +r+ +++Vd v++    k++ y+Vl++GT++G++lK++++ s
    KIAA1445   514 CVTQD--SVRFSHLVVDLVQA----KDtLYHVLYIGTESGTILKALSTAS 557  

                   ssssssaglesvlleelqvfppgsepirdmvlsskk<-*
                   +s     ++ ++l e  ++ p  +ep+r++ + ++    
    KIAA1445   558 RS-----LHGCYLEELHVLPPGRREPLRSLRILHSA    588  

SM00423: domain 1 of 1, from 606 to 653: score 53.7, E = 2.3e-11
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                      rC++y  +s ++Cl+ardpy CgW+  ++rC+++e+ ++++ + qn+
    KIAA1445   606    RCAAY--RSQGACLGARDPY-CGWDGKQQRCSTLEDSSNMSLWTQNI 649  

                   ssgpssqCp<-*
                   +      Cp   
    KIAA1445   650 T-----ACP    653  

SM00209: domain 1 of 5, from 718 to 771: score 65.0, E = 9.4e-15
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w++Ws+W  CS  +CG G     +++R+R      cs+p+pr+  gg
    KIAA1445   718    WTPWSSWALCS-TSCGIG-----FQVRQR-----SCSNPAPRH--GG 751  

                   epCs....EtrpCntqpnLqpCp<-*
                   + C ++++E r Cn++    pCp   
    KIAA1445   752 RICVgksrEERFCNEN---TPCP    771  

SM00209: domain 2 of 5, from 776 to 822: score 51.9, E = 8.2e-11
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w +W++WS CS   CGgG     +++R+R    +c ++      n  
    KIAA1445   776    WASWGSWSKCS-SNCGGG-----MQSRRR----ACENG------NSC 806  

                   epCs.EtrpCntqpnLqpCp<-*
                     C  E+++Cn++     Cp   
    KIAA1445   807 LGCGvEFKTCNPE----GCP    822  

SM00209: domain 3 of 5, from 907 to 959: score 71.6, E = 1e-16
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w +W++WS+CS + C  G     +r+R+R     +c +p+p  +ngg
    KIAA1445   907    WAAWGPWSSCS-RDCELG-----FRVRKR-----TCTNPEP--RNGG 940  

                   epCs....EtrpCntqpnLqpCp<-*
                    pC ++  E+++Cn+q    +Cp   
    KIAA1445   941 LPCVgdaaEYQDCNPQ----ACP    959  

SM00209: domain 4 of 5, from 964 to 1016: score 61.1, E = 1.4e-13
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ws+W++WSpCS ++CGgG     + +RtRs    c sp+p+   +g+
    KIAA1445   964    WSCWTSWSPCS-ASCGGG-----HYQRTRS----CTSPAPS---PGE 997  

                   epCs....EtrpCntqpnLqpCp<-*
                     C + ++E   C tq    +Cp   
    KIAA1445   998 DICLglhtEEALCATQ----ACP    1016 

SM00209: domain 5 of 5, from 1019 to 1066: score 23.1, E = 0.028
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ws+WseWS C+      G      ++R+R    +c         +g 
    KIAA1445  1019    WSPWSEWSKCT----DDG-----AQSRSR----HCEEL-----LPGS 1047 

                   epCs....EtrpCntqpnLqpCp<-*
                   + C ++++++rpC  +    + p   
    KIAA1445  1048 SACAgnssQSRPCPYS----EIP    1066 

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