hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03105112/chunk_1/iprscan-20080502-03105112.nocrc
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Query sequence: KIAA1449
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       173.0    7.1e-49   7
PF00400.22.fs WD domain, G-beta repeat                       163.1    6.5e-46   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/6      34    61 ..    10    38 .]    18.2  0.00037
PF00400.22.ls   2/7      68   106 ..     1    38 []    35.6  1.6e-07
PF00400.22.fs   2/6      68   106 ..     1    38 []    33.6  1.7e-08
PF00400.22.ls   3/7     110   148 ..     1    38 []    36.0  1.2e-07
PF00400.22.fs   3/6     110   148 ..     1    38 []    34.1  1.3e-08
PF00400.22.ls   4/7     161   199 ..     1    38 []    26.7  7.9e-05
PF00400.22.fs   4/6     161   199 ..     1    38 []    24.7  5.5e-06
PF00400.22.ls   5/7     203   241 ..     1    38 []    37.9  3.2e-08
PF00400.22.fs   5/6     203   241 ..     1    38 []    35.9  3.7e-09
PF00400.22.fs   6/6     245   283 ..     1    38 []    16.6    0.001

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 6, from 34 to 61: score 18.2, E = 0.00037
                   *->stVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++V+++  +p   ++l++++rD  i+iW+   
    KIAA1449    34    NGVNALQLDPA-LNRLFTAGRDSIIRIWS    61   

PF00400.22.ls: domain 2 of 7, from 68 to 106: score 35.6, E = 1.6e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         + + ++Ht++V+++  + + g++l+s+S+D t+k+W+   
    KIAA1449    68    DPYIaSMeHHTDWVNDIVLCCN-GKTLISASSDTTVKVWN    106  

PF00400.22.fs: domain 2 of 6, from 68 to 106: score 33.6, E = 1.7e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         + + ++Ht++V+++  + + g++l+s+S+D t+k+W+   
    KIAA1449    68    DPYIaSMeHHTDWVNDIVLCCN-GKTLISASSDTTVKVWN    106  

PF00400.22.ls: domain 3 of 7, from 110 to 148: score 36.0, E = 1.2e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g c ++l+ H++ V ++a++ d  +l+as++ D+ i +Wd   
    KIAA1449   110    GFCMsTLrTHKDYVKALAYAKD-KELVASAGLDRQIFLWD    148  

PF00400.22.fs: domain 3 of 6, from 110 to 148: score 34.1, E = 1.3e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g c ++l+ H++ V ++a++ d  +l+as++ D+ i +Wd   
    KIAA1449   110    GFCMsTLrTHKDYVKALAYAKD-KELVASAGLDRQIFLWD    148  

PF00400.22.ls: domain 4 of 7, from 161 to 199: score 26.7, E = 7.9e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +++l+g +++++++a ++  g++++sgS  + +++Wd   
    KIAA1449   161    TVTTsSLsGNKDSIYSLAMNQL-GTIIVSGSTEKVLRVWD    199  

PF00400.22.fs: domain 4 of 6, from 161 to 199: score 24.7, E = 5.5e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +++l+g +++++++a ++  g++++sgS  + +++Wd   
    KIAA1449   161    TVTTsSLsGNKDSIYSLAMNQL-GTIIVSGSTEKVLRVWD    199  

PF00400.22.ls: domain 5 of 7, from 203 to 241: score 37.9, E = 3.2e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +  l+gHt+ V ++  + d g++++sgS+Dgti++W+   
    KIAA1449   203    CAKLmKLkGHTDNVKALLLNRD-GTQCLSGSSDGTIRLWS    241  

PF00400.22.fs: domain 5 of 6, from 203 to 241: score 35.9, E = 3.7e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +  l+gHt+ V ++  + d g++++sgS+Dgti++W+   
    KIAA1449   203    CAKLmKLkGHTDNVKALLLNRD-GTQCLSGSSDGTIRLWS    241  

PF00400.22.fs: domain 6 of 6, from 245 to 283: score 16.6, E = 0.001
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        c+ +++ H  +V+++ ++    +++ sg+rD++i+  d   
    KIAA1449   245    QRCIaTYrVHDEGVWALQVNDA-FTHVYSGGRDRKIYCTD    283  

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