hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03204397/chunk_1/iprscan-20080502-03204397.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1455 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06484.2.fs Teneurin Intracellular Region 163.4 1.9e-76 1 PF07974.3.ls EGF-like domain 182.0 1.4e-51 8 PF07974.3.fs EGF-like domain 168.6 1.4e-47 8 PF00008.17.ls EGF-like domain 130.9 3.3e-36 7 PF00008.17.fs EGF-like domain 118.8 1.4e-32 7 PF05593.4.ls RHS Repeat 73.1 8.1e-19 6 PF05593.4.fs RHS Repeat 62.9 3.6e-17 8 PF01436.11.fs NHL repeat 51.1 5.7e-13 5 PF01414.9.fs Delta serrate ligand 38.1 4.6e-11 7 PF01436.11.ls NHL repeat 42.3 1.5e-09 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06484.2.fs 1/1 2 59 .. 353 410 .] 163.4 1.9e-76 PF07974.3.fs 1/8 269 295 .. 1 37 [] 26.1 2.7e-06 PF07974.3.ls 1/8 269 295 .. 1 37 [] 27.7 3.7e-05 PF07974.3.ls 3/8 333 360 .. 1 37 [] 25.6 0.00016 PF07974.3.ls 4/8 365 392 .. 1 37 [] 22.6 0.0013 PF00008.17.ls 3/7 365 392 .. 1 38 [] 23.8 0.00058 PF07974.3.ls 6/8 432 458 .. 1 37 [] 22.6 0.0013 PF00008.17.ls 6/7 463 489 .. 1 38 [] 24.4 0.00039 PF07974.3.ls 7/8 463 489 .. 1 37 [] 27.0 6.1e-05 PF00008.17.ls 7/7 494 524 .. 1 38 [] 19.8 0.0093 PF01436.11.ls 1/5 923 951 .. 1 29 [] 0.8 11 PF01436.11.fs 2/5 970 989 .. 7 26 .. 7.7 0.54 PF01436.11.fs 3/5 1034 1049 .. 1 17 [. 8.1 0.42 PF01436.11.ls 2/5 1034 1059 .. 1 29 [] 5.4 2.8 PF01436.11.fs 4/5 1093 1119 .. 1 29 [] 12.7 0.022 PF01436.11.ls 3/5 1093 1119 .. 1 29 [] 14.6 0.19 PF01436.11.ls 4/5 1153 1180 .. 1 29 [] 0.9 11 PF01436.11.fs 5/5 1222 1249 .. 1 29 [] 18.7 0.00051 PF01436.11.ls 5/5 1222 1249 .. 1 29 [] 20.6 0.0052 PF05593.4.ls 1/6 1298 1335 .. 1 44 [] 11.3 1.4 PF05593.4.ls 2/6 1361 1399 .. 1 44 [] 12.7 0.96 PF05593.4.ls 3/6 1574 1610 .. 1 44 [] 11.0 1.6 PF05593.4.ls 5/6 1904 1942 .. 1 44 [] 12.9 0.9 PF05593.4.ls 6/6 1958 1996 .. 1 44 [] 20.2 0.0069 Alignments of top-scoring domains: PF06484.2.fs: domain 1 of 1, from 2 to 59: score 163.4, E = 1.9e-76 *->HFLFKtGtGTtPLFSTatPGYtmaSGsVYSPPtRPLPRNTLSRsAFk HFLFKtGtGTtPLFSTatPGYtmaSGsVYSPPtRPLPRNTLSRsAFk KIAA1455 2 HFLFKTGTGTTPLFSTATPGYTMASGSVYSPPTRPLPRNTLSRSAFK 48 fKKssKYCsWK<-* fKKssKYCsWK KIAA1455 49 FKKSSKYCSWK 59 PF07974.3.fs: domain 1 of 8, from 269 to 295: score 26.1, E = 2.7e-06 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+++C+g +G Cv g C+C +g + G+dC KIAA1455 269 CprnCHG-NGECV--------SGTCHCFPG----FLGPDC 295 PF07974.3.ls: domain 1 of 8, from 269 to 295: score 27.7, E = 3.7e-05 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+++C+g +G Cv g C+C +g + G+dC KIAA1455 269 CprnCHG-NGECV--------SGTCHCFPG----FLGPDC 295 PF07974.3.ls: domain 3 of 8, from 333 to 360: score 25.6, E = 0.00016 *->C....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C +++C+g +G+C+ g C C+sg y G C KIAA1455 333 CidpqCGG-RGICI--------MGSCACNSG----YKGESC 360 PF07974.3.ls: domain 4 of 8, from 365 to 392: score 22.6, E = 0.0013 *->C....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C +++C++ hG+C+ +g C+C++g + G C KIAA1455 365 CidpgCSN-HGVCI--------HGECHCSPG----WGGSNC 392 PF00008.17.ls: domain 3 of 7, from 365 to 392: score 23.8, E = 0.00058 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C + +Csn+G C+ + +C+C pG + G +C KIAA1455 365 CIDP--GCSNHGVCIHG----ECHCSPG----WGGSNC 392 PF07974.3.ls: domain 6 of 8, from 432 to 458: score 22.6, E = 0.0013 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+ +C+ hG+C g C C+ g ++G++C KIAA1455 432 CsvdCGS-HGVCM--------GGTCRCEEG----WTGPAC 458 PF00008.17.ls: domain 6 of 7, from 463 to 489: score 24.4, E = 0.00039 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+p C +GtC d+ +CeC +G ++G++C KIAA1455 463 CHP---RCAEHGTCKDG----KCECSQG----WNGEHC 489 PF07974.3.ls: domain 7 of 8, from 463 to 489: score 27.0, E = 6.1e-05 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+++C + hGtC gkC+C++g + G +C KIAA1455 463 ChprCAE-HGTCK--------DGKCECSQG----WNGEHC 489 PF00008.17.ls: domain 7 of 7, from 494 to 524: score 19.8, E = 0.0093 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+ C+ +G+C+ ++g++C C+pG + G C KIAA1455 494 CPG---LCNSNGRCTLDQNGWHCVCQPG----WRGAGC 524 PF01436.11.ls: domain 1 of 5, from 923 to 951: score 0.8, E = 11 *->lnrPhGvavdpsdGrvyVaD.senhrvqvf<-* l P +a + dG +yV D ++ r++ KIAA1455 923 LLAPVALACG-IDGSLYVGDfNYVRRIFPS 951 PF01436.11.fs: domain 2 of 5, from 970 to 989: score 7.7, E = 0.54 *->vavdpsdGrvyVaDsenhrv<-* +a dp +G++yV+D+++ r+ KIAA1455 970 LATDPVTGDLYVSDTNTRRI 989 PF01436.11.fs: domain 3 of 5, from 1034 to 1049: score 8.1, E = 0.42 *->lnrPhGvavdpsdGrvy<-* l +P G avd ++G +y KIAA1455 1034 LMSPKGMAVD-KNGLIY 1049 PF01436.11.ls: domain 2 of 5, from 1034 to 1059: score 5.4, E = 2.8 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l +P G avd ++G +y +D +++ KIAA1455 1034 LMSPKGMAVD-KNGLIYFVD--GTMIRKV 1059 PF01436.11.fs: domain 4 of 5, from 1093 to 1119: score 12.7, E = 0.022 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l P+++a++p d+ +yV D n+ v ++ KIAA1455 1093 LEWPTDLAINPMDNSIYVLD--NNVVLQI 1119 PF01436.11.ls: domain 3 of 5, from 1093 to 1119: score 14.6, E = 0.19 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l P+++a++p d+ +yV D n+ v ++ KIAA1455 1093 LEWPTDLAINPMDNSIYVLD--NNVVLQI 1119 PF01436.11.ls: domain 4 of 5, from 1153 to 1180: score 0.9, E = 11 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l + + +av+ +G +y+++++ ++ + KIAA1455 1153 LESATAIAVS-YSGVLYITETDEKKINRI 1180 PF01436.11.fs: domain 5 of 5, from 1222 to 1249: score 18.7, E = 0.00051 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+ P+++a + +dG++y+aD +n r++ KIAA1455 1222 LSAPSSLAAS-PDGTLYIADLGNIRIRAV 1249 PF01436.11.ls: domain 5 of 5, from 1222 to 1249: score 20.6, E = 0.0052 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+ P+++a + +dG++y+aD +n r++ KIAA1455 1222 LSAPSSLAAS-PDGTLYIADLGNIRIRAV 1249 PF05593.4.ls: domain 1 of 6, from 1298 to 1335: score 11.3, E = 1.4 *->YDadGrLtavtdpsggvgttyrYDaaGrltaltlttstdagGrt<-* Y+ d ++tavtd++g+++ + r D+ ++++++ ++ ++ KIAA1455 1298 YSNDNDITAVTDSNGNTL-RIRRDPNRMPVRV-----VSPDNQV 1335 PF05593.4.ls: domain 2 of 6, from 1361 to 1399: score 12.7, E = 0.96 *->YDadGrLtavt.dpsggvgttyrYDaaGrltaltlttstdagGrt<- Y + L+a+ +d +g ++ + YD++Grlt + t + G++ KIAA1455 1361 YHGNSGLLATKsDETGWTT-FFDYDSEGRLTNV-----TFPTGVV 1399 * KIAA1455 - - PF05593.4.ls: domain 3 of 6, from 1574 to 1610: score 11.0, E = 1.6 *->YDadGrLtavtdpsggvgt.tyrYDaaGrltaltlttstdagGrt<- Y+++G++ + g++ + YD++Gr++++ a+G+t KIAA1455 1574 YSSTGQIAS---IQRGTTSeKVDYDGQGRIVSR-----VFADGKT 1610 * KIAA1455 - - PF05593.4.ls: domain 5 of 6, from 1904 to 1942: score 12.9, E = 0.9 *->YDadGrLtavtdpsggvgtt.yrYDaaGrltaltlttstdagGrt<- YD +G+L +++ +++ t++rYD ++r+t+l d + r KIAA1455 1904 YDLNGNLHLLNPSNSARL-TpLRYDLRDRITRL-----GDVQYRL 1942 * KIAA1455 - - PF05593.4.ls: domain 6 of 6, from 1958 to 1996: score 20.2, E = 0.0069 *->YDadGrLtavtdpsggvgt.tyrYDaaGrltaltlttstdagGrt<- Y++ G Lt v+ + g +t yrYD++Gr++++ + G+ KIAA1455 1958 YSSKGLLTRVY-SKGSGWTvIYRYDGLGRRVSS-----KTSLGQH 1996 * KIAA1455 - - //