# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh16161s1.fasta.huge -Q ../query/KIAA1457.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1457, 1359 aa
 vs ./tmplib.24314 library

1986146 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.6303+/-0.00687; mu= 10.6112+/- 0.468
 mean_var=184.8139+/-43.626, 0's: 0 Z-trim: 4  B-trim: 3 in 1/39
 Lambda= 0.094342

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1705  ( 498 res)   fj17028                     ( 498)  203 40.8 0.00073


>>KIAA1705  ( 498 res)   fj17028                          (498 aa)
 initn: 200 init1:  98 opt: 203  Z-score: 161.2  bits: 40.8 E(): 0.00073
Smith-Waterman score: 203;  22.826% identity (51.812% similar) in 276 aa overlap (715-976:224-487)

          690       700       710       720       730       740    
KIAA14 STYELDTIQQHQAFLSSLHASVLRTEPCSRHSSSSTMLDGTGALGRFDFEITDLFLFGCP
                                     :. ... .  : ::    :.. ..: .: :
KIAA17 DERWMSYEERHLLDELYITKRRLKEIEERLHGLKASSMTQTPAL---KFKVENFFCMGSP
           200       210       220       230          240       250

          750           760       770       780       790       800
KIAA14 LGLVLALRKTVIP----ALDVFQLRPACQQVYNLFHPADPSASRLEPLLERRFHALPPFS
       :.. ::::  . :    . : .  :  :... :.:::.:: : :::::. ...  . : .
KIAA17 LAVFLALRG-IRPGNTGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQ
               260       270       280       290       300         

               810       820       830       840       850         
KIAA14 VPRYQRY-PLGDGCSTLLVETVQRNPELVLEGGPLAPLPHGDGFLETSMPVPAPTWQDGP
       .  :.   ::          .  ..:  : :.  .. .:       .. :: .       
KIAA17 IHWYNTSNPLPYEHMKPSFLNPAKEPTSVSENEGISTIPS-----PVTSPVLSRRHYGES
     310       320       330       340            350       360    

     860       870              880       890       900       910  
KIAA14 RPGCAESDVLQTHNAA-------FQEHGAPSSPGTAPASRGFRRASEISIASQVSGMAES
         . .....: . . .       :.. :  :.  .. .:.   .  .  .::  .  . .
KIAA17 ITNIGKASILGAASIGKGLGGMLFSRFGRSSTTQSSETSKDSMEDEKKPVASPSATTVGT
          370       380       390       400       410       420    

              920       930       940       950       960       970
KIAA14 YTA--SSIAQIAAKWWGQKRIDYALYCPDALTAFPTVALPHLFHASYWESTDVVSFLLRQ
        :   :: . . .    ..:::. :    . . . ...  :   ..:: : ::. :::  
KIAA17 QTLPHSSSGFLDSALELDHRIDFELREGLVESRYWSAVTSH---TAYWSSLDVALFLLTF
          430       440       450       460          470       480 

              980       990      1000      1010      1020      1030
KIAA14 VMRHDNSSILELDGKEVSVFTPSKPREKWQRKRTHVKLRNVTANHRINDALANEDGPQVL
       ...:..                                                      
KIAA17 MYKHEHDDDAKPNLDPI                                           
             490                                                   




1359 residues in 1 query   sequences
1986146 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:15 2008 done: Thu Dec 18 15:23:16 2008
 Total Scan time:  0.800 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]