hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03242438/chunk_1/iprscan-20080502-03242438.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1457 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02121.8.ls Phosphatidylinositol transfer protein 592.8 2.9e-175 1 PF02121.8.fs Phosphatidylinositol transfer protein 590.9 1.1e-174 1 PF02862.8.fs DDHD domain 307.9 1.7e-89 2 PF02862.8.ls DDHD domain 273.9 3e-79 1 PF08235.3.fs LNS2 (Lipin/Ned1/Smp2) 252.0 1e-74 1 PF08235.3.ls LNS2 (Lipin/Ned1/Smp2) 253.8 3.3e-73 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02121.8.ls 1/1 17 269 .. 1 265 [] 592.8 2.9e-175 PF02121.8.fs 1/1 17 269 .. 1 265 [] 590.9 1.1e-174 PF02862.8.fs 1/2 731 831 .. 1 112 [. 160.0 3.1e-45 PF02862.8.ls 1/1 731 973 .. 1 276 [] 273.9 3e-79 PF02862.8.fs 2/2 866 973 .. 99 276 .] 147.8 9e-42 PF08235.3.ls 1/1 1118 1249 .. 1 158 [] 253.8 3.3e-73 PF08235.3.fs 1/1 1118 1249 .. 1 158 [] 252.0 1e-74 Alignments of top-scoring domains: PF02121.8.ls: domain 1 of 1, from 17 to 269: score 592.8, E = 2.9e-175 *->mLiKEYrilLPlsvdEYqvaQLYmiakkSreeshGegsGVEilaNeP m iKEYri+LP++v+EY++aQLYmi+kkSr+e+ GegsGVEil N+P KIAA1457 17 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRP 63 YedgPGgkGQYThKiYHvgskiPawirmllPkgALevhEeaWNAYPytrT Y+dgPGg+GQYThK+YHvg +iP w+r++lPk+AL v Ee+WNAYPytrT KIAA1457 64 YTDGPGGSGQYTHKVYHVGMHIPSWFRSILPKAALRVVEESWNAYPYTRT 113 rytcpymvekFsieiETyykpDlGqqeNVfnLsgkdkktriidyiDivkr r tcp +vekFsi+iET+yk D G + VfnLs+ +k + id iDivk KIAA1457 114 RFTCP-FVEKFSIDIETFYKTDAGENPDVFNLSPVEKNQLTIDFIDIVK- 161 dqvasgdYkaeEDPklfkSvkTgRGPLgddWkkelwrevktkdlPtprnm d+v +Yk eEDPklf+S kT+RGPL+++W +e+ k++ P KIAA1457 162 DPVPHNEYKTEEDPKLFQSTKTQRGPLSENWIEEY----KKQVFP----- 202 slMcAYKLckVeFryWGlQtkvEkFIhdvalrrvmlraHRQawcWqDeWt +McAYKLckVeFryWG+Q+k+E+FIhd +lrrvm+raHRQawcWqDeW KIAA1457 203 -IMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWY 251 dLtmeDIRrlEeetareL<-* +L+me IR+lE+e++++L KIAA1457 252 GLSMENIRELEKEAQLML 269 PF02121.8.fs: domain 1 of 1, from 17 to 269: score 590.9, E = 1.1e-174 *->mLiKEYrilLPlsvdEYqvaQLYmiakkSreeshGegsGVEilaNeP m iKEYri+LP++v+EY++aQLYmi+kkSr+e+ GegsGVEil N+P KIAA1457 17 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRP 63 YedgPGgkGQYThKiYHvgskiPawirmllPkgALevhEeaWNAYPytrT Y+dgPGg+GQYThK+YHvg +iP w+r++lPk+AL v Ee+WNAYPytrT KIAA1457 64 YTDGPGGSGQYTHKVYHVGMHIPSWFRSILPKAALRVVEESWNAYPYTRT 113 rytcpymvekFsieiETyykpDlGqqeNVfnLsgkdkktriidyiDivkr r tcp +vekFsi+iET+yk D G + VfnLs+ +k + id iDivk KIAA1457 114 RFTCP-FVEKFSIDIETFYKTDAGENPDVFNLSPVEKNQLTIDFIDIVK- 161 dqvasgdYkaeEDPklfkSvkTgRGPLgddWkkelwrevktkdlPtprnm d+v +Yk eEDPklf+S kT+RGPL+++W +e+ k++ P KIAA1457 162 DPVPHNEYKTEEDPKLFQSTKTQRGPLSENWIEEY----KKQVFP----- 202 slMcAYKLckVeFryWGlQtkvEkFIhdvalrrvmlraHRQawcWqDeWt +McAYKLckVeFryWG+Q+k+E+FIhd +lrrvm+raHRQawcWqDeW KIAA1457 203 -IMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWY 251 dLtmeDIRrlEeetareL<-* +L+me IR+lE+e++++L KIAA1457 252 GLSMENIRELEKEAQLML 269 PF02862.8.fs: domain 1 of 2, from 731 to 831: score 160.0, E = 3.1e-45 *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC +dF++ ++F++G+PlGl+l+lR++ ++++lD++++rpaC KIAA1457 731 FDFEITDLFLFGCPLGLVLALRKT---------VIPALDVFQLRPAC 768 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep +q+YN+FHP+DP A+RLEPL++++f+ +++P+++p+y++++ Lg+++s++ KIAA1457 769 QQVYNLFHPADPSASRLEPLLERRFH-ALPPFSVPRYQRYP-LGDGCSTL 816 ltrviadlpqnflsn<-* l ++ + p ++l++ KIAA1457 817 LVETVQRNPELVLEG 831 PF02862.8.ls: domain 1 of 1, from 731 to 973: score 273.9, E = 3e-79 *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC +dF++ ++F++G+PlGl+l+lR++ ++++lD++++rpaC KIAA1457 731 FDFEITDLFLFGCPLGLVLALRKT---------VIPALDVFQLRPAC 768 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep +q+YN+FHP+DP A+RLEPL++++f+ +++P+++p+y++++ Lg+++s++ KIAA1457 769 QQVYNLFHPADPSASRLEPLLERRFH-ALPPFSVPRYQRYP-LGDGCSTL 816 l................................................t l ++ +++++ ++++ + +++++ +++ + + ++ +++++++ ++ KIAA1457 817 LvetvqrnpelvleggplaplphgdgfletsmpvpaptwqdgprpgcaeS 866 rviadlpqnflsnlqssiksspvltsasgasrkneeeteevkestarsGC +v+++++ f+++ ++s sp++++as+++r+++e++ ++ s+ KIAA1457 867 DVLQTHNAAFQEHGAPS---SPGTAPASRGFRRASEISIASQVSG----- 908 SPRmTpapeqtenltemliareeravesqpssfgrsSiektkStaslgsv ++e++t+++ia+ KIAA1457 909 ---------MAESYTASSIAQ----------------------------- 920 nktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaallafns +++k++g+kRIDY+L++P+al+af++ KIAA1457 921 ------------------------IAAKWWGQKRIDYALYCPDALTAFPT 946 YlsalksHasYWeSeDvAlFlLkeiyr<-* +++++++HasYWeS+Dv++FlL++++r KIAA1457 947 VALPHLFHASYWESTDVVSFLLRQVMR 973 PF02862.8.fs: domain 2 of 2, from 866 to 973: score 147.8, E = 9e-42 *->trviadlpqnflsnlqssiksspvltsasgasrkneeeteevkesta ++v+++++ f+++ ++s sp++++as+++r+++e++ ++ s+ KIAA1457 866 SDVLQTHNAAFQEHGAPS---SPGTAPASRGFRRASEISIASQVSG- 908 rsGCSPRmTpapeqtenltemliareeravesqpssfgrsSiektkStas ++e++t+++ia+ KIAA1457 909 -------------MAESYTASSIAQ------------------------- 920 lgsvnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaall +++k++g+kRIDY+L++P+al+ KIAA1457 921 ----------------------------IAAKWWGQKRIDYALYCPDALT 942 afnsYlsalksHasYWeSeDvAlFlLkeiyr<-* af+++++++++HasYWeS+Dv++FlL++++r KIAA1457 943 AFPTVALPHLFHASYWESTDVVSFLLRQVMR 973 PF08235.3.ls: domain 1 of 1, from 1118 to 1249: score 253.8, E = 3.3e-73 *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI VV+S IDG++++S +si+G+DP+++aG++d++r++q++GY+I KIAA1457 1118 VVFS-IDGSFAAS------VSIMGSDPKVRAGAVDVVRHWQDLGYLI 1157 iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe iY+T+Rp++Q+++++++L+q+ ++P+G+v+++ ++++ KIAA1457 1158 IYVTGRPDMQKQRVVAWLAQH-----NFPHGVVSFC----------DGLV 1192 kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF ++P+++K+ +L+ + ++ +++++A++G++ +Dv++Y+a++++p++I+ KIAA1457 1193 HDPLRHKANFLKLLISE---LHLRVHAAYGST-KDVAVYSAISLSPMQIY 1238 iinpkgevhqe<-* i+++ ++++q+ KIAA1457 1239 IVGRPTKKLQQ 1249 PF08235.3.fs: domain 1 of 1, from 1118 to 1249: score 252.0, E = 1e-74 *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI VV+S IDG++++S +si+G+DP+++aG++d++r++q++GY+I KIAA1457 1118 VVFS-IDGSFAAS------VSIMGSDPKVRAGAVDVVRHWQDLGYLI 1157 iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe iY+T+Rp++Q+++++++L+q+ ++P+G+v+++ ++++ KIAA1457 1158 IYVTGRPDMQKQRVVAWLAQH-----NFPHGVVSFC----------DGLV 1192 kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF ++P+++K+ +L+ + ++ +++++A++G++ +Dv++Y+a++++p++I+ KIAA1457 1193 HDPLRHKANFLKLLISE---LHLRVHAAYGST-KDVAVYSAISLSPMQIY 1238 iinpkgevhqe<-* i+++ ++++q+ KIAA1457 1239 IVGRPTKKLQQ 1249 //