hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03442658/chunk_1/iprscan-20080502-03442658.nocrc
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Query sequence: KIAA1469
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                            112.6      1e-30  10
PF00560.23.fs Leucine Rich Repeat                             94.3    3.4e-25  10
PF01462.9.fs Leucine rich repeat N-terminal domain           25.7    6.5e-07   2
PF01463.14.fs Leucine rich repeat C-terminal domain           20.1    2.5e-05   1
PF01462.9.ls Leucine rich repeat N-terminal domain           26.2    0.00011   1
PF00041.11.fs Fibronectin type III domain                     17.9    0.00017   1
PF01463.14.ls Leucine rich repeat C-terminal domain           22.0     0.0019   1
PF00041.11.ls Fibronectin type III domain                     10.6      0.013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01462.9.ls   1/1      43    70 ..     1    34 []    26.2  0.00011
PF01462.9.fs   1/2      43    70 ..     1    34 []    24.4  1.6e-06
PF00560.23.ls   1/10     72    95 ..     1    24 []    11.4      1.9
PF00560.23.ls   2/10     97   115 ..     1    24 []     8.0      8.6
PF00560.23.ls   4/10    142   166 ..     1    24 []     9.3      4.9
PF00560.23.ls   5/10    168   186 ..     1    24 []    11.7      1.7
PF00560.23.fs   6/10    189   211 ..     1    24 []    12.0    0.032
PF00560.23.ls   6/10    189   211 ..     1    24 []    13.9     0.56
PF00560.23.ls   7/10    213   237 ..     1    24 []     8.5      6.8
PF00560.23.ls   8/10    239   257 ..     1    24 []    10.6      2.8
PF00560.23.fs   9/10    261   283 ..     1    24 []    15.1   0.0043
PF00560.23.ls   9/10    261   283 ..     1    24 []    17.0    0.063
PF00560.23.fs  10/10    285   307 ..     1    24 []    13.9   0.0095
PF00560.23.ls  10/10    285   307 ..     1    24 []    15.8     0.15
PF01463.14.fs   1/1     344   369 ..     1    26 []    20.1  2.5e-05
PF01463.14.ls   1/1     344   369 ..     1    26 []    22.0   0.0019
PF00041.11.ls   1/1     418   498 ..     1    84 []    10.6    0.013

Alignments of top-scoring domains:
PF01462.9.ls: domain 1 of 1, from 43 to 70: score 26.2, E = 0.00011
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                       Cp  C+C      +  ++C +r Lt ++P ++P   
    KIAA1469    43    SCPSVCRCD-----AGFIYCNDRFLT-SIPTGIP    70   

PF01462.9.fs: domain 1 of 2, from 43 to 70: score 24.4, E = 1.6e-06
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                       Cp  C+C      +  ++C +r Lt ++P ++P   
    KIAA1469    43    SCPSVCRCD-----AGFIYCNDRFLT-SIPTGIP    70   

PF00560.23.ls: domain 1 of 10, from 72 to 95: score 11.4, E = 1.9
                   *->nLeeLdLsgCNpsltgs..lpssl.nl<-*
                        ++L+L++ N +++ ++++ps+l+nl   
    KIAA1469    72    DATTLYLQN-N-QIN-NagIPSDLkNL    95   

PF00560.23.ls: domain 2 of 10, from 97 to 115: score 8.0, E = 8.6
                   *->nLeeLdLsgCNpsltgslpsslnl<-*
                      ++e ++L++ N sl +++p   nl   
    KIAA1469    97    KVERIYLYH-N-SL-DEFPT--NL    115  

PF00560.23.ls: domain 4 of 10, from 142 to 166: score 9.3, E = 4.9
                   *->nLeeLdLsgCNpsltgs..lpss.l.nl<-*
                       LeeL+L++ N s++   +++++++++    
    KIAA1469   142    YLEELHLDD-N-SVS-AvsIEEGaFrDS    166  

PF00560.23.ls: domain 5 of 10, from 168 to 186: score 11.7, E = 1.7
                   *->nLeeLdLsgCNpsltgslpsslnl<-*
                       L+ L Ls+ N +l+ ++p   +l   
    KIAA1469   168    YLRLLFLSR-N-HLS-TIPW--GL    186  

PF00560.23.fs: domain 6 of 10, from 189 to 211: score 12.0, E = 0.032
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      ++eeL+L++ N +++ +++s +l++l   
    KIAA1469   189    TIEELRLDD-N-RIS-TISSPsLqGL    211  

PF00560.23.ls: domain 6 of 10, from 189 to 211: score 13.9, E = 0.56
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      ++eeL+L++ N +++ +++s +l++l   
    KIAA1469   189    TIEELRLDD-N-RIS-TISSPsLqGL    211  

PF00560.23.ls: domain 7 of 10, from 213 to 237: score 8.5, E = 6.8
                   *->nLeeLdLsgCNpsltgs..lpss.l.nl<-*
                      +L+ L L+g N  l+ +++l +  + nl   
    KIAA1469   213    SLKRLVLDG-N-LLN-NhgLGDKvFfNL    237  

PF00560.23.ls: domain 8 of 10, from 239 to 257: score 10.6, E = 2.8
                   *->nLeeLdLsgCNpsltgslpsslnl<-*
                      nL+eL+L + N slt   p+  nl   
    KIAA1469   239    NLTELSLVR-N-SLT-AAPV--NL    257  

PF00560.23.fs: domain 9 of 10, from 261 to 283: score 15.1, E = 0.0043
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++L+L++ N +++  +p+++++ l   
    KIAA1469   261    NLRKLYLQD-N-HIN-RVPPNaFsYL    283  

PF00560.23.ls: domain 9 of 10, from 261 to 283: score 17.0, E = 0.063
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++L+L++ N +++  +p+++++ l   
    KIAA1469   261    NLRKLYLQD-N-HIN-RVPPNaFsYL    283  

PF00560.23.fs: domain 10 of 10, from 285 to 307: score 13.9, E = 0.0095
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L  Ld+s+ N +l+ +lp + +++l   
    KIAA1469   285    QLYRLDMSN-N-NLS-NLPQGiFdDL    307  

PF00560.23.ls: domain 10 of 10, from 285 to 307: score 15.8, E = 0.15
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L  Ld+s+ N +l+ +lp + +++l   
    KIAA1469   285    QLYRLDMSN-N-NLS-NLPQGiFdDL    307  

PF01463.14.fs: domain 1 of 1, from 344 to 369: score 20.1, E = 2.5e-05
                   *->dlrCasPeslrGqplldlppsdfsCp<-*
                       l+C+ Pe++rG+ ++dl+++ f+C+   
    KIAA1469   344    GLMCQAPEKVRGMAIKDLNAELFDCK    369  

PF01463.14.ls: domain 1 of 1, from 344 to 369: score 22.0, E = 0.0019
                   *->dlrCasPeslrGqplldlppsdfsCp<-*
                       l+C+ Pe++rG+ ++dl+++ f+C+   
    KIAA1469   344    GLMCQAPEKVRGMAIKDLNAELFDCK    369  

PF00041.11.ls: domain 1 of 1, from 418 to 498: score 10.6, E = 0.013
                   *->PsaPtnltvtdv..tstsltlsWspPtgngpitgYevtyRqpkngge
                       ++ + +t+t  + ts+++++sW+ +    p t  ++ +  + +++ 
    KIAA1469   418    SPSRKTITITVKsvTSDTIHISWKLA---LPMTALRLSW-LKLGHSP 460  

                   ....wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
                     ++ +e +v+g  ++y +t L+P+++Y+v+ +       + S   
    KIAA1469   461 afgsITETIVTGERSEYLVTALEPDSPYKVCMV---PM--ETS    498  

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