hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03442658/chunk_1/iprscan-20080502-03442658.nocrc
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Query sequence: KIAA1469
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00560.23.ls Leucine Rich Repeat 112.6 1e-30 10
PF00560.23.fs Leucine Rich Repeat 94.3 3.4e-25 10
PF01462.9.fs Leucine rich repeat N-terminal domain 25.7 6.5e-07 2
PF01463.14.fs Leucine rich repeat C-terminal domain 20.1 2.5e-05 1
PF01462.9.ls Leucine rich repeat N-terminal domain 26.2 0.00011 1
PF00041.11.fs Fibronectin type III domain 17.9 0.00017 1
PF01463.14.ls Leucine rich repeat C-terminal domain 22.0 0.0019 1
PF00041.11.ls Fibronectin type III domain 10.6 0.013 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF01462.9.ls 1/1 43 70 .. 1 34 [] 26.2 0.00011
PF01462.9.fs 1/2 43 70 .. 1 34 [] 24.4 1.6e-06
PF00560.23.ls 1/10 72 95 .. 1 24 [] 11.4 1.9
PF00560.23.ls 2/10 97 115 .. 1 24 [] 8.0 8.6
PF00560.23.ls 4/10 142 166 .. 1 24 [] 9.3 4.9
PF00560.23.ls 5/10 168 186 .. 1 24 [] 11.7 1.7
PF00560.23.fs 6/10 189 211 .. 1 24 [] 12.0 0.032
PF00560.23.ls 6/10 189 211 .. 1 24 [] 13.9 0.56
PF00560.23.ls 7/10 213 237 .. 1 24 [] 8.5 6.8
PF00560.23.ls 8/10 239 257 .. 1 24 [] 10.6 2.8
PF00560.23.fs 9/10 261 283 .. 1 24 [] 15.1 0.0043
PF00560.23.ls 9/10 261 283 .. 1 24 [] 17.0 0.063
PF00560.23.fs 10/10 285 307 .. 1 24 [] 13.9 0.0095
PF00560.23.ls 10/10 285 307 .. 1 24 [] 15.8 0.15
PF01463.14.fs 1/1 344 369 .. 1 26 [] 20.1 2.5e-05
PF01463.14.ls 1/1 344 369 .. 1 26 [] 22.0 0.0019
PF00041.11.ls 1/1 418 498 .. 1 84 [] 10.6 0.013
Alignments of top-scoring domains:
PF01462.9.ls: domain 1 of 1, from 43 to 70: score 26.2, E = 0.00011
*->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
Cp C+C + ++C +r Lt ++P ++P
KIAA1469 43 SCPSVCRCD-----AGFIYCNDRFLT-SIPTGIP 70
PF01462.9.fs: domain 1 of 2, from 43 to 70: score 24.4, E = 1.6e-06
*->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
Cp C+C + ++C +r Lt ++P ++P
KIAA1469 43 SCPSVCRCD-----AGFIYCNDRFLT-SIPTGIP 70
PF00560.23.ls: domain 1 of 10, from 72 to 95: score 11.4, E = 1.9
*->nLeeLdLsgCNpsltgs..lpssl.nl<-*
++L+L++ N +++ ++++ps+l+nl
KIAA1469 72 DATTLYLQN-N-QIN-NagIPSDLkNL 95
PF00560.23.ls: domain 2 of 10, from 97 to 115: score 8.0, E = 8.6
*->nLeeLdLsgCNpsltgslpsslnl<-*
++e ++L++ N sl +++p nl
KIAA1469 97 KVERIYLYH-N-SL-DEFPT--NL 115
PF00560.23.ls: domain 4 of 10, from 142 to 166: score 9.3, E = 4.9
*->nLeeLdLsgCNpsltgs..lpss.l.nl<-*
LeeL+L++ N s++ +++++++++
KIAA1469 142 YLEELHLDD-N-SVS-AvsIEEGaFrDS 166
PF00560.23.ls: domain 5 of 10, from 168 to 186: score 11.7, E = 1.7
*->nLeeLdLsgCNpsltgslpsslnl<-*
L+ L Ls+ N +l+ ++p +l
KIAA1469 168 YLRLLFLSR-N-HLS-TIPW--GL 186
PF00560.23.fs: domain 6 of 10, from 189 to 211: score 12.0, E = 0.032
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
++eeL+L++ N +++ +++s +l++l
KIAA1469 189 TIEELRLDD-N-RIS-TISSPsLqGL 211
PF00560.23.ls: domain 6 of 10, from 189 to 211: score 13.9, E = 0.56
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
++eeL+L++ N +++ +++s +l++l
KIAA1469 189 TIEELRLDD-N-RIS-TISSPsLqGL 211
PF00560.23.ls: domain 7 of 10, from 213 to 237: score 8.5, E = 6.8
*->nLeeLdLsgCNpsltgs..lpss.l.nl<-*
+L+ L L+g N l+ +++l + + nl
KIAA1469 213 SLKRLVLDG-N-LLN-NhgLGDKvFfNL 237
PF00560.23.ls: domain 8 of 10, from 239 to 257: score 10.6, E = 2.8
*->nLeeLdLsgCNpsltgslpsslnl<-*
nL+eL+L + N slt p+ nl
KIAA1469 239 NLTELSLVR-N-SLT-AAPV--NL 257
PF00560.23.fs: domain 9 of 10, from 261 to 283: score 15.1, E = 0.0043
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
nL++L+L++ N +++ +p+++++ l
KIAA1469 261 NLRKLYLQD-N-HIN-RVPPNaFsYL 283
PF00560.23.ls: domain 9 of 10, from 261 to 283: score 17.0, E = 0.063
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
nL++L+L++ N +++ +p+++++ l
KIAA1469 261 NLRKLYLQD-N-HIN-RVPPNaFsYL 283
PF00560.23.fs: domain 10 of 10, from 285 to 307: score 13.9, E = 0.0095
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
+L Ld+s+ N +l+ +lp + +++l
KIAA1469 285 QLYRLDMSN-N-NLS-NLPQGiFdDL 307
PF00560.23.ls: domain 10 of 10, from 285 to 307: score 15.8, E = 0.15
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
+L Ld+s+ N +l+ +lp + +++l
KIAA1469 285 QLYRLDMSN-N-NLS-NLPQGiFdDL 307
PF01463.14.fs: domain 1 of 1, from 344 to 369: score 20.1, E = 2.5e-05
*->dlrCasPeslrGqplldlppsdfsCp<-*
l+C+ Pe++rG+ ++dl+++ f+C+
KIAA1469 344 GLMCQAPEKVRGMAIKDLNAELFDCK 369
PF01463.14.ls: domain 1 of 1, from 344 to 369: score 22.0, E = 0.0019
*->dlrCasPeslrGqplldlppsdfsCp<-*
l+C+ Pe++rG+ ++dl+++ f+C+
KIAA1469 344 GLMCQAPEKVRGMAIKDLNAELFDCK 369
PF00041.11.ls: domain 1 of 1, from 418 to 498: score 10.6, E = 0.013
*->PsaPtnltvtdv..tstsltlsWspPtgngpitgYevtyRqpkngge
++ + +t+t + ts+++++sW+ + p t ++ + + +++
KIAA1469 418 SPSRKTITITVKsvTSDTIHISWKLA---LPMTALRLSW-LKLGHSP 460
....wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
++ +e +v+g ++y +t L+P+++Y+v+ + + S
KIAA1469 461 afgsITETIVTGERSEYLVTALEPDSPYKVCMV---PM--ETS 498
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