hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03460461/chunk_1/iprscan-20080502-03460461.nocrc
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Query sequence: KIAA1470
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00415.9.fs Regulator of chromosome condensation (RCC1)     92.2    6.5e-26   5
PF00415.9.ls Regulator of chromosome condensation (RCC1)     80.3    5.5e-21   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00415.9.fs   1/5     210   259 ..     1    68 []    36.7  6.2e-10
PF00415.9.ls   1/4     210   259 ..     1    68 []    38.4  2.3e-08
PF00415.9.fs   2/5     262   311 ..     1    68 []    18.0  0.00015
PF00415.9.ls   2/4     262   311 ..     1    68 []    19.7   0.0048

Alignments of top-scoring domains:
PF00415.9.fs: domain 1 of 5, from 210 to 259: score 36.7, E = 6.2e-10
                   *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
                      +G++ s+G+  +e GqLG g +                P l+     
    KIAA1470   210    EGKLWSWGR--NEKGQLGHGDTKRVE-----------APRLI----- 238  

                   ssslsekVvsvasGgqHtval<-*
                       +e+ vs+a+G  Ht al   
    KIAA1470   239 EGLSHEVIVSAACGRNHTLAL    259  

PF00415.9.ls: domain 1 of 4, from 210 to 259: score 38.4, E = 2.3e-08
                   *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
                      +G++ s+G+  +e GqLG g +                P l+     
    KIAA1470   210    EGKLWSWGR--NEKGQLGHGDTKRVE-----------APRLI----- 238  

                   ssslsekVvsvasGgqHtval<-*
                       +e+ vs+a+G  Ht al   
    KIAA1470   239 EGLSHEVIVSAACGRNHTLAL    259  

PF00415.9.fs: domain 2 of 5, from 262 to 311: score 18.0, E = 0.00015
                   *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
                       G V+++G   +  GqLGlg   ++            +P+++     
    KIAA1470   262    TGSVFAFGE--NKMGQLGLGNQTDAVP----------SPAQI----- 291  

                   ssslsekVvsvasGgqHtval<-*
                      +  +  + a+G+ +       
    KIAA1470   292 -MYNGQPITKMACGAEFSMIM    311  

PF00415.9.ls: domain 2 of 4, from 262 to 311: score 19.7, E = 0.0048
                   *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
                       G V+++G   +  GqLGlg   ++            +P+++     
    KIAA1470   262    TGSVFAFGE--NKMGQLGLGNQTDAVP----------SPAQI----- 291  

                   ssslsekVvsvasGgqHtval<-*
                      +  +  + a+G+ +       
    KIAA1470   292 -MYNGQPITKMACGAEFSMIM    311  

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