hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03474719/chunk_1/iprscan-20080502-03474719.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1471 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03097.8.fs BRO1-like domain 626.2 8.3e-190 1 PF03097.8.ls BRO1-like domain 628.0 7.2e-186 1 PF00102.17.fs Protein-tyrosine phosphatase 210.8 2.9e-60 1 PF00102.17.ls Protein-tyrosine phosphatase 130.9 3.4e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03097.8.fs 1/1 46 422 .. 1 446 [] 626.2 8.3e-190 PF03097.8.ls 1/1 46 422 .. 1 446 [] 628.0 7.2e-186 PF00102.17.fs 1/1 1255 1418 .. 1 191 [. 210.8 2.9e-60 PF00102.17.ls 1/1 1255 1421 .] 1 275 [] 130.9 3.4e-36 Alignments of top-scoring domains: PF03097.8.fs: domain 1 of 1, from 46 to 422: score 626.2, E = 8.3e-190 *->pllalplKeTkevDlakpLkdyIkrtYgedpesqkfeddklaeLddL p+++l lKe+ + +++ + k++++++Yge pe+ ++++ l++L+ L KIAA1471 46 PMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEA--YNEE-LKKLELL 89 RnnavlrtpdrseaglelLyrYYaQLeaLelRFPsdsdrqiknveFtWyD R+na ++r+ +g+++L +Y +QL++L++R P++s+++ v+ tW++ KIAA1471 90 RQNA--VRVPRDFEGCSVLRKYLGQLHYLQSRVPMGSGQEAA-VPVTWTE 136 afgygslFGtgkpvsqtsLaFEKasVLFNigALySqiAasqdRatdeGLK +f +gk+v+++++++E+a++L+N+gAL+S+++a+ +R ++eG+K KIAA1471 137 IF-------SGKSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMK 179 tAchyFQaAAGcFayLrEnflnappsspsvDlseetLgaLenLMLAQAQE +c++FQ+AAG+FayLrE+f++a+ svD+s++ L+ +nLML+QAQE KIAA1471 180 VSCTHFQCAAGAFAYLREHFPQAY----SVDMSRQILTLNVNLMLGQAQE 225 cfweKaildgdaskkdslilLkaAKLAaQvselYeeAlraYkmmteapvs c +eK++ld+ +k +l+ A+++aQv+++Y+eA+ra +++++++ KIAA1471 226 CLLEKSMLDN---RKSFLV----ARISAQVVDYYKEACRA---LENPDTA 265 py...idkeWikhvqvKaahFaAlAhYrqalaleDekkkyGeeIarLqkA ++ ++i+k+W+k+vq+K+++FaA+Ah+++++++e e++k+Ge++a++q+A KIAA1471 266 SLlgrIQKDWKKLVQMKIYYFAAVAHLHMGKQAE-EQQKFGERVAYFQSA 314 lsQLYdmPEGlptiLkdeeRRllkeAlkkkkglpaeealrshplcshlrk l+ +l+eA k +kg+p+ KIAA1471 315 LD-------------------KLNEAIKLAKGQPD--------------- 330 iDslqedLkglksvvkekLkraeKDNDfIYlqpVPsessLppikpasmVK ++q++L+++++v+ k+++a+KDNDfIY+++VP++ +L+p+k+a++VK KIAA1471 331 --TVQDALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVK 378 pippeevlkpqdeletdkpevgdLFkkLVPlaVhealsaYsErkdklvra p+p++ ++++ ++ d+F+kLVP+a+hea+s+YsE+k+kl+r+ KIAA1471 379 PLPVNPTDPAVTGP--------DIFAKLVPMAAHEASSLYSEEKAKLLRE 420 ev<-* ++ KIAA1471 421 MM 422 PF03097.8.ls: domain 1 of 1, from 46 to 422: score 628.0, E = 7.2e-186 *->pllalplKeTkevDlakpLkdyIkrtYgedpesqkfeddklaeLddL p+++l lKe+ + +++ + k++++++Yge pe+ ++++ l++L+ L KIAA1471 46 PMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEA--YNEE-LKKLELL 89 RnnavlrtpdrseaglelLyrYYaQLeaLelRFPsdsdrqiknveFtWyD R+na ++r+ +g+++L +Y +QL++L++R P++s+++ v+ tW++ KIAA1471 90 RQNA--VRVPRDFEGCSVLRKYLGQLHYLQSRVPMGSGQEAA-VPVTWTE 136 afgygslFGtgkpvsqtsLaFEKasVLFNigALySqiAasqdRatdeGLK +f +gk+v+++++++E+a++L+N+gAL+S+++a+ +R ++eG+K KIAA1471 137 IF-------SGKSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMK 179 tAchyFQaAAGcFayLrEnflnappsspsvDlseetLgaLenLMLAQAQE +c++FQ+AAG+FayLrE+f++a+ svD+s++ L+ +nLML+QAQE KIAA1471 180 VSCTHFQCAAGAFAYLREHFPQAY----SVDMSRQILTLNVNLMLGQAQE 225 cfweKaildgdaskkdslilLkaAKLAaQvselYeeAlraYkmmteapvs c +eK++ld+ +k +l+ A+++aQv+++Y+eA+ra +++++++ KIAA1471 226 CLLEKSMLDN---RKSFLV----ARISAQVVDYYKEACRA---LENPDTA 265 py...idkeWikhvqvKaahFaAlAhYrqalaleDekkkyGeeIarLqkA ++ ++i+k+W+k+vq+K+++FaA+Ah+++++++e e++k+Ge++a++q+A KIAA1471 266 SLlgrIQKDWKKLVQMKIYYFAAVAHLHMGKQAE-EQQKFGERVAYFQSA 314 lsQLYdmPEGlptiLkdeeRRllkeAlkkkkglpaeealrshplcshlrk l+ +l+eA k +kg+p+ KIAA1471 315 LD-------------------KLNEAIKLAKGQPD--------------- 330 iDslqedLkglksvvkekLkraeKDNDfIYlqpVPsessLppikpasmVK ++q++L+++++v+ k+++a+KDNDfIY+++VP++ +L+p+k+a++VK KIAA1471 331 --TVQDALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVK 378 pippeevlkpqdeletdkpevgdLFkkLVPlaVhealsaYsErkdklvra p+p++ ++++ ++ d+F+kLVP+a+hea+s+YsE+k+kl+r+ KIAA1471 379 PLPVNPTDPAVTGP--------DIFAKLVPMAAHEASSLYSEEKAKLLRE 420 ev<-* ++ KIAA1471 421 MM 422 PF00102.17.fs: domain 1 of 1, from 1255 to 1418: score 210.8, E = 2.9e-60 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv KNR++d+ pyD++RV+L + +DYINAs ++g + KIAA1471 1255 YSLKNRHQDVMPYDSNRVVLR----SGKDDYINASCVEG-------L 1290 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC ++++ aTQ+Plp T +DFW Mv eqkv+vIVML ++ E+++ K KIAA1471 1291 SPYCPPLVATQAPLPGTAADFWLMVHEQKVSVIVMLVSEAEMEK--QK-V 1337 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina a+Y+P+ ++g+++++G ++ l s+ +++ + R+l+l++++ KIAA1471 1338 ARYFPT--ERGQPMVHGALSLALSSVRSTETHVERVLSLQFrDQ------ 1379 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqps<-* + +r++ h+h+++WP+ g P+s p ll+++++v+ ++ + KIAA1471 1380 -----SLKRSLVHLHFPTWPELGLPDS-PSNLLRFIQEVHAHYLH 1418 PF00102.17.ls: domain 1 of 1, from 1255 to 1421: score 130.9, E = 3.4e-36 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv KNR++d+ pyD++RV+L + +DYINAs ++g + KIAA1471 1255 YSLKNRHQDVMPYDSNRVVLR----SGKDDYINASCVEG-------L 1290 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC ++++ aTQ+Plp T +DFW Mv eqkv+vIVML ++ E+++ K KIAA1471 1291 SPYCPPLVATQAPLPGTAADFWLMVHEQKVSVIVMLVSEAEMEK--QK-V 1337 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina a+Y+P+ ++g+++++G ++ l s+ +++ + R+l+l++++ KIAA1471 1338 ARYFPT--ERGQPMVHGALSLALSSVRSTETHVERVLSLQFrDQ------ 1379 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg + +r++ h+h+++WP+ g P+s p ll+++++v+ ++ KIAA1471 1380 -----SLKRSLVHLHFPTWPELGLPDS-PSNLLRFIQEVHAHYL------ 1417 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf ++ + KIAA1471 1418 ------------------------------------------HQRP---- 1421 diVkelRsqRpgmVQteeQYiFlydaile<-* KIAA1471 - ----------------------------- - //