HUGE

Gene/Protein Characteristic Table for KIAA1472

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07034
Accession No. :	AB040905
Description :	Syntabulin.
HUGO Gene Name :
Clone Name :	fj03211 [Vector Info]
Flexi ORF Clone :	pF1KA1472
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 2528 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 720 bp

Genome contig ID gi51511724r_110555591
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
GTGTTTCCATTTAAATAAATGTTTTATCCTCCCAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATAATAATTATTTCTGTGATTTTACTTCTATGTATAAGAAAGACAAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 r 110655591 110724177 6 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 601 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD72979	3e-202	100.0	Golgi-localized...	Homo sapiens
BAD72976	3e-202	100.0	Golgi-localized...	Homo sapiens
Q9NX95	3e-202	100.0	Syntabulin; Syn...	Homo sapiens
CAD28457	3e-202	100.0	hypothetical pr...	Homo sapiens
EAW91936	3.1e-202	100.0	hypothetical pr...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB002372	1.6e-25	41.8	KIAA0374

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 544 SFLVDLLAVAAPVVPTVLWAFST 566 PRIMARY 23

2 571 TDPVYNIGALLRGCCVVALHSL 592 SECONDARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	544	SFLVDLLAVAAPVVPTVLWAFST	566	PRIMARY	23
2	571	TDPVYNIGALLRGCCVVALHSL	592	SECONDARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CATGTTATCTCCTTGCTTTGC

Primer_r
: CCAAGTAAGACAGTAAAGAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	720 bp
Genome contig ID	gi51511724r_110555591
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- GTGTTTCCATTTAAATAAATGTTTTATCCTCCCAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAATAATAATTATTTCTGTGATTTTACTTCTATGTATAAGAAAGACAAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	r	110655591	110724177	6	100.0	Perfect prediction

Primer_f	: CATGTTATCTCCTTGCTTTGC
Primer_r	: CCAAGTAAGACAGTAAAGAGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1472

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information