hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03510205/chunk_1/iprscan-20080502-03510205.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1473 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 428.6 7.9e-126 14 PF00096.16.fs Zinc finger, C2H2 type 406.2 4.5e-119 13 PF01352.17.fs KRAB box 92.4 1.2e-25 1 PF01352.17.ls KRAB box 94.4 3.1e-25 1 PF01096.9.fs Transcription factor S-II (TFIIS) 78.4 1.4e-23 11 PF01286.9.fs XPA protein N-terminal 64.3 1.4e-17 10 PF07754.2.fs Domain of unknown function (DUF1610) 42.9 1.7e-10 10 PF07754.2.ls Domain of unknown function (DUF1610) 36.9 6.4e-08 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 15 55 .. 1 41 [] 92.4 1.2e-25 PF01352.17.ls 1/1 15 55 .. 1 41 [] 94.4 3.1e-25 PF00096.16.ls 2/14 184 206 .. 1 24 [] 26.9 6.8e-05 PF00096.16.fs 1/13 184 206 .. 1 24 [] 24.9 5.9e-05 PF00096.16.ls 3/14 212 234 .. 1 24 [] 31.9 2.1e-06 PF00096.16.fs 2/13 212 234 .. 1 24 [] 29.9 3.3e-06 PF00096.16.ls 4/14 240 262 .. 1 24 [] 35.3 1.9e-07 PF00096.16.fs 3/13 240 262 .. 1 24 [] 33.3 4.7e-07 PF00096.16.ls 5/14 268 290 .. 1 24 [] 37.8 3.5e-08 PF00096.16.fs 4/13 268 290 .. 1 24 [] 35.8 1.1e-07 PF00096.16.ls 6/14 296 318 .. 1 24 [] 35.3 1.9e-07 PF00096.16.fs 5/13 296 318 .. 1 24 [] 33.4 4.6e-07 PF00096.16.ls 7/14 324 346 .. 1 24 [] 36.3 9.5e-08 PF00096.16.fs 6/13 324 346 .. 1 24 [] 34.4 2.6e-07 PF00096.16.ls 8/14 352 374 .. 1 24 [] 37.4 4.6e-08 PF00096.16.fs 7/13 352 374 .. 1 24 [] 35.4 1.4e-07 PF00096.16.ls 9/14 380 402 .. 1 24 [] 37.9 3.3e-08 PF00096.16.fs 8/13 380 402 .. 1 24 [] 35.9 1.1e-07 PF00096.16.ls 10/14 408 430 .. 1 24 [] 31.6 2.6e-06 PF00096.16.fs 9/13 408 430 .. 1 24 [] 29.6 4e-06 PF00096.16.ls 11/14 436 458 .. 1 24 [] 32.6 1.3e-06 PF00096.16.fs 10/13 436 458 .. 1 24 [] 30.6 2.2e-06 PF00096.16.ls 12/14 464 486 .. 1 24 [] 34.5 3.4e-07 PF00096.16.fs 11/13 464 486 .. 1 24 [] 32.5 7.4e-07 PF00096.16.ls 13/14 492 514 .. 1 24 [] 20.3 0.0064 PF00096.16.fs 13/13 520 542 .. 1 24 [] 28.8 6.2e-06 PF00096.16.ls 14/14 520 542 .. 1 24 [] 30.8 4.4e-06 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 15 to 55: score 92.4, E = 1.2e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+ EEW++Ld aQ+nLYr+VMlENy+nLv++g KIAA1473 15 LTFRDVAIEFSLEEWQCLDTAQQNLYRNVMLENYRNLVFVG 55 PF01352.17.ls: domain 1 of 1, from 15 to 55: score 94.4, E = 3.1e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+ EEW++Ld aQ+nLYr+VMlENy+nLv++g KIAA1473 15 LTFRDVAIEFSLEEWQCLDTAQQNLYRNVMLENYRNLVFVG 55 PF00096.16.ls: domain 2 of 14, from 184 to 206: score 26.9, E = 6.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ksF+ s+L +H+r+H KIAA1473 184 FKCK-ECEKSFCMLSHLAQHKRIH 206 PF00096.16.fs: domain 1 of 13, from 184 to 206: score 24.9, E = 5.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ksF+ s+L +H+r+H KIAA1473 184 FKCK-ECEKSFCMLSHLAQHKRIH 206 PF00096.16.ls: domain 3 of 14, from 212 to 234: score 31.9, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++ snL +H+r+H KIAA1473 212 YKCK-ECGKAYNETSNLSTHKRIH 234 PF00096.16.fs: domain 2 of 13, from 212 to 234: score 29.9, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++ snL +H+r+H KIAA1473 212 YKCK-ECGKAYNETSNLSTHKRIH 234 PF00096.16.ls: domain 4 of 14, from 240 to 262: score 35.3, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r s+L++H+ +H KIAA1473 240 YKCE-ECGKAFNRLSHLTTHKIIH 262 PF00096.16.fs: domain 3 of 13, from 240 to 262: score 33.3, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r s+L++H+ +H KIAA1473 240 YKCE-ECGKAFNRLSHLTTHKIIH 262 PF00096.16.ls: domain 5 of 14, from 268 to 290: score 37.8, E = 3.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++++nL++H+r+H KIAA1473 268 YKCE-ECGKAFNQSANLTTHKRIH 290 PF00096.16.fs: domain 4 of 13, from 268 to 290: score 35.8, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++++nL++H+r+H KIAA1473 268 YKCE-ECGKAFNQSANLTTHKRIH 290 PF00096.16.ls: domain 6 of 14, from 296 to 318: score 35.3, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++Fs++s+L++H+ +H KIAA1473 296 YKCE-ECGRAFSQSSTLTAHKIIH 318 PF00096.16.fs: domain 5 of 13, from 296 to 318: score 33.4, E = 4.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++Fs++s+L++H+ +H KIAA1473 296 YKCE-ECGRAFSQSSTLTAHKIIH 318 PF00096.16.ls: domain 7 of 14, from 324 to 346: score 36.3, E = 9.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s+L++H+ +H KIAA1473 324 YKCE-ECGKAFSQSSTLTTHKIIH 346 PF00096.16.fs: domain 6 of 13, from 324 to 346: score 34.4, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s+L++H+ +H KIAA1473 324 YKCE-ECGKAFSQSSTLTTHKIIH 346 PF00096.16.ls: domain 8 of 14, from 352 to 374: score 37.4, E = 4.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L++H+r+H KIAA1473 352 YKCE-ECGKAFSQLSHLTTHKRIH 374 PF00096.16.fs: domain 7 of 13, from 352 to 374: score 35.4, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L++H+r+H KIAA1473 352 YKCE-ECGKAFSQLSHLTTHKRIH 374 PF00096.16.ls: domain 9 of 14, from 380 to 402: score 37.9, E = 3.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L++H+r+H KIAA1473 380 YKCE-ECGKAFKQSSTLTTHKRIH 402 PF00096.16.fs: domain 8 of 13, from 380 to 402: score 35.9, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L++H+r+H KIAA1473 380 YKCE-ECGKAFKQSSTLTTHKRIH 402 PF00096.16.ls: domain 10 of 14, from 408 to 430: score 31.6, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+Fsr s+L++H+r+H KIAA1473 408 YKCE-VCSKAFSRFSHLTTHKRIH 430 PF00096.16.fs: domain 9 of 13, from 408 to 430: score 29.6, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+Fsr s+L++H+r+H KIAA1473 408 YKCE-VCSKAFSRFSHLTTHKRIH 430 PF00096.16.ls: domain 11 of 14, from 436 to 458: score 32.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s+L++H+ +H KIAA1473 436 YKCE-ECGKAFNLSSQLTTHKIIH 458 PF00096.16.fs: domain 10 of 13, from 436 to 458: score 30.6, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s+L++H+ +H KIAA1473 436 YKCE-ECGKAFNLSSQLTTHKIIH 458 PF00096.16.ls: domain 12 of 14, from 464 to 486: score 34.5, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+ +H KIAA1473 464 YKCE-ECGKAFNQSSTLSKHKVIH 486 PF00096.16.fs: domain 11 of 13, from 464 to 486: score 32.5, E = 7.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+ +H KIAA1473 464 YKCE-ECGKAFNQSSTLSKHKVIH 486 PF00096.16.ls: domain 13 of 14, from 492 to 514: score 20.3, E = 0.0064 *->ykCpfdCgksFsrksnLkrHlrtH<-* yk + +Cgk+F+++s+L++H+++H KIAA1473 492 YKYE-ECGKAFNQSSHLTTHKMIH 514 PF00096.16.fs: domain 13 of 13, from 520 to 542: score 28.8, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L+rH+++H KIAA1473 520 YKCE-ECGKAFNNSSILNRHKMIH 542 PF00096.16.ls: domain 14 of 14, from 520 to 542: score 30.8, E = 4.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L+rH+++H KIAA1473 520 YKCE-ECGKAFNNSSILNRHKMIH 542 //