hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04011651/chunk_1/iprscan-20080502-04011651.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1479 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 603.5 1.8e-178 1 PF01403.10.fs Sema domain 601.5 7e-178 1 PF01437.15.fs Plexin repeat 29.9 3.3e-09 1 PF01437.15.ls Plexin repeat 33.7 6.1e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.fs 1/1 70 507 .. 1 490 [] 601.5 7e-178 PF01403.10.ls 1/1 70 507 .. 1 490 [] 603.5 1.8e-178 PF01437.15.fs 1/1 525 552 .. 1 29 [. 29.9 3.3e-09 PF01437.15.ls 1/1 525 593 .. 1 63 [] 33.7 6.1e-07 Alignments of top-scoring domains: PF01403.10.fs: domain 1 of 1, from 70 to 507: score 601.5, E = 7e-178 *->frtllldedrgrLyVGArNhvyvLnledls...erlqqkigWpsspg f+++l+ r++Ly+++r+ vy +nl++ +++ + ++k++W s KIAA1479 70 FQLMLKI--RDTLYIAGRDQVYTVNLNEMPkteVIPNKKLTWRSR-- 112 eekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl ++++e C+mkGk+ ++eC+Nfi+V +p nd+ ++vCGTnaF+P+C++ KIAA1479 113 QQDRENCAMKGKH----KDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRY 158 inlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrt ++l++ +++ ++e+sG +rCP+d++++++++++ + KIAA1479 159 YRLST-------------LEY-DGEEISGLARCPFDARQTNVALFA-D-- 191 geLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFV g+LYs+tvaD F+ +d++I+Rs+g+ + lrT ++dskw++eP+F KIAA1479 192 GKLYSATVAD------FLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFL 235 dsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr ++ ++ ++VYFFFrE+ave++ n gka+ysRVaR+CknD+GG KIAA1479 236 HAIEYG-------NYVYFFFREIAVEHN-NLGKAVYSRVARICKNDMGGS 277 rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL +++ ++ WT+FLKARLnCSvpG + fyF++LQ++ +++ + KIAA1479 278 QRVLEKHWTSFLKARLNCSVPG--DSF-FYFDVLQSITDIIQING----- 319 gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs p + GVFtt+ nsi+g SAVCaFsm dI+ vF +G fk+q KIAA1479 320 -----IPTVVGVFTTQLNSIPG----SAVCAFSMDDIEKVF-KGRFKEQ- 358 sEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfiksh ++p+s w+ ++ kvP+PRPG+C++ + y+++ d+PD+tl+fiksh KIAA1479 359 -KTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSH 407 pLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTd pLmd +vpP+ P+f++t+v+yrlT+I Vd ag +q+YtV+F+G + KIAA1479 408 PLMDSAVPPIADEPWFTKTRVRYRLTAISVD--HSAGPYQNYTVIFVGSE 455 dGtvlKkvvvlsrsss.syeevvleelqvfkdpri.......ePvqnlei G vlK ++ s ++ +v+lee++ +++ +++ +++++ v +l++ KIAA1479 456 AGMVLKVLAKT--SPFsLNDSVLLEEIEAYNHAKCsaeneedKKVISLQL 503 sskq<-* + KIAA1479 504 DKDH 507 PF01403.10.ls: domain 1 of 1, from 70 to 507: score 603.5, E = 1.8e-178 *->frtllldedrgrLyVGArNhvyvLnledls...erlqqkigWpsspg f+++l+ r++Ly+++r+ vy +nl++ +++ + ++k++W s KIAA1479 70 FQLMLKI--RDTLYIAGRDQVYTVNLNEMPkteVIPNKKLTWRSR-- 112 eekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl ++++e C+mkGk+ ++eC+Nfi+V +p nd+ ++vCGTnaF+P+C++ KIAA1479 113 QQDRENCAMKGKH----KDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRY 158 inlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrt ++l++ +++ ++e+sG +rCP+d++++++++++ + KIAA1479 159 YRLST-------------LEY-DGEEISGLARCPFDARQTNVALFA-D-- 191 geLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFV g+LYs+tvaD F+ +d++I+Rs+g+ + lrT ++dskw++eP+F KIAA1479 192 GKLYSATVAD------FLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFL 235 dsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr ++ ++ ++VYFFFrE+ave++ n gka+ysRVaR+CknD+GG KIAA1479 236 HAIEYG-------NYVYFFFREIAVEHN-NLGKAVYSRVARICKNDMGGS 277 rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL +++ ++ WT+FLKARLnCSvpG + fyF++LQ++ +++ + KIAA1479 278 QRVLEKHWTSFLKARLNCSVPG--DSF-FYFDVLQSITDIIQING----- 319 gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs p + GVFtt+ nsi+g SAVCaFsm dI+ vF +G fk+q KIAA1479 320 -----IPTVVGVFTTQLNSIPG----SAVCAFSMDDIEKVF-KGRFKEQ- 358 sEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfiksh ++p+s w+ ++ kvP+PRPG+C++ + y+++ d+PD+tl+fiksh KIAA1479 359 -KTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSH 407 pLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTd pLmd +vpP+ P+f++t+v+yrlT+I Vd ag +q+YtV+F+G + KIAA1479 408 PLMDSAVPPIADEPWFTKTRVRYRLTAISVD--HSAGPYQNYTVIFVGSE 455 dGtvlKkvvvlsrsss.syeevvleelqvfkdpri.......ePvqnlei G vlK ++ s ++ +v+lee++ +++ +++ +++++ v +l++ KIAA1479 456 AGMVLKVLAKT--SPFsLNDSVLLEEIEAYNHAKCsaeneedKKVISLQL 503 sskq<-* + KIAA1479 504 DKDH 507 PF01437.15.fs: domain 1 of 1, from 525 to 552: score 29.9, E = 3.3e-09 *->nCsqytsC.ssCLaardpfyCgWCssegrC<-* +C++y+sC+ sC+a+rdp yCgW s+ g+C KIAA1479 525 RCERYGSCkKSCIASRDP-YCGWLSQ-GSC 552 PF01437.15.ls: domain 1 of 1, from 525 to 593: score 33.7, E = 6.1e-07 *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsayt.s......f. +C++y+sC+ sC+a+rdp yCgW s+ g+C r + ++ +++f KIAA1479 525 RCERYGSCkKSCIASRDP-YCGWLSQ-GSCGRVT--PgMllltedFf 567 ygeCprse.pendqwldwswssskCp<-* + +++e++e+d+ + + + +C+ KIAA1479 568 AFHNHSAEgYEQDTEFGNTAHLGDCH 593 //