hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04011651/chunk_1/iprscan-20080502-04011651.nocrc
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Query sequence: KIAA1479
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00630                                                 627.8   3.5e-184   1
SM00423                                                  25.6      0.007   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00630    1/1      68   498 ..     1   532 []   627.8 3.5e-184
SM00423    1/1     525   593 ..     1    56 []    25.6    0.007

Alignments of top-scoring domains:
SM00630: domain 1 of 1, from 68 to 498: score 627.8, E = 3.5e-184
                   *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps
                      ++++l+ + ++  +ly+++r+ +y ++l+++    ev   ++l+w+s
    KIAA1479    68    LDFQLMLKIRD--TLYIAGRDQVYTVNLNEM-PKTEVIPNKKLTWRS 111  

                   ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv
                    +       ++e+Ca+kgk    + ++eC+N+i+v +++nd      ++v
    KIAA1479   112 RQQ------DRENCAMKGK----H-KDECHNFIKVFVPRND----EMVFV 146  

                   CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg
                   CGTnaf+P  +Cr+++l++le+                    ++++sg +
    KIAA1479   147 CGTNAFNP--MCRYYRLSTLEY-------------------DGEEISGLA 175  

                   kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs
                   +CP+d++++++++++dg       LYs+t+adf++       sd++i+Rs
    KIAA1479   176 RCPFDARQTNVALFADG------KLYSATVADFLA-------SDAVIYRS 212  

                   lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipesgdgdfVYF
                   +g        +   lrt +ydskw   ++ep+F +a e+     g++VYF
    KIAA1479   213 MG--------DGSALRTIKYDSKW---IKEPHFLHAIEY-----GNYVYF 246  

                   FFrEtaveainrdcssekavvsRVARvCknDvGG.qrlLqkkWtSFLKar
                   FFrE+ave++n   +  kav+sRVAR+CknD+GG+qr+L+k+WtSFLKar
    KIAA1479   247 FFREIAVEHNN--LG--KAVYSRVARICKNDMGGsQRVLEKHWTSFLKAR 292  

                   LnCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqgq
                   LnCsvp  g++  fyF++LQ+++++      + +gi   + + gVF+   
    KIAA1479   293 LNCSVP--GDSF-FYFDVLQSITDII-----QINGI---PTVVGVFT--- 328  

                   qtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpvegnk
                    t+     n+ipgSAVCaFs++dI+ vF+ G+fk++++p+s w++v+++k
    KIAA1479   329 -TQL----NSIPGSAVCAFSMDDIEKVFK-GRFKEQKTPDSVWTAVPEDK 372  

                   vPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPltgr
                   vP+prPG+C++++++e   + +s d+Pd++l+fik+hpLmd avpP+   
    KIAA1479   373 VPKPRPGCCAKHGLAE--AYKTSIDFPDETLSFIKSHPLMDSAVPPIADE 420  

                   PllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvvvsrs
                   P+++kt ++yrlT+i Vd+ +g++++   ytV+F+G++ G vlKv+ + s
    KIAA1479   421 PWFTKTRVRYRLTAISVDHSAGPYQN---YTVIFVGSEAGMVLKVLAKTS 467  

                   ssssssaglesvlleelqvfppgsepirdmvlsskk<-*
                       +  ++ svllee++ + ++  ++ + + ++k    
    KIAA1479   468 ----PFSLNDSVLLEEIEAYNHA-KCSAENEEDKKV    498  

SM00423: domain 1 of 1, from 525 to 593: score 25.6, E = 0.007
                   *->rCsqygvtsC.seCllardpygCgWCssegrCtrg............
                      rC++y  +sC+ +C+++rdpy CgW s +g C r +++    +++  
    KIAA1479   525    RCERY--GSCkKSCIASRDPY-CGWLS-QGSCGRVtpgmllltedff 567  

                   .erCderrgsrqnwssg...pssqCp<-*
                     +  +++g +q+ ++g++ +   C+   
    KIAA1479   568 aFHNHSAEGYEQDTEFGntaHLGDCH    593  

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