hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04043014/chunk_1/iprscan-20080502-04043014.nocrc
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Query sequence: KIAA1481
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08687.1.ls Apx/Shroom domain ASD2                         558.7   5.3e-165   1
PF08687.1.fs Apx/Shroom domain ASD2                         556.9   1.9e-164   1
PF08688.1.ls Apx/Shroom domain ASD1                         259.3    7.2e-75   1
PF08688.1.fs Apx/Shroom domain ASD1                         257.6    2.4e-74   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08688.1.fs   1/1     267   450 ..     1   236 []   257.6  2.4e-74
PF08688.1.ls   1/1     267   450 ..     1   236 []   259.3  7.2e-75
PF08687.1.fs   1/1    1057  1340 ..     1   299 []   556.9 1.9e-164
PF08687.1.ls   1/1    1057  1340 ..     1   299 []   558.7 5.3e-165

Alignments of top-scoring domains:
PF08688.1.fs: domain 1 of 1, from 267 to 450: score 257.6, E = 2.4e-74
                   *->akLqKSkStvtLaaldaErEdgtsldrnksgDLSacpslegSFsntY
                      a+L++S+St++L  ++ ErE+ + +dr++s+   ++p+l+++Fs++Y
    KIAA1481   267    ARLLRSQSTFQL-SSEPEREPEW-RDRPGSP---ESPLLDAPFSRAY 308  

                   KekLKeAQarVLrATSFkRrDLepslLDnPaAesrpnyPeplearpemrp
                   ++++K+AQ+rVL+ATSF+RrDLe++     +  sr ++P+p +a+++ r+
    KIAA1481   309 RNSIKDAQSRVLGATSFRRRDLELGA----PVASRSWRPRPSSAHVGLRS 354  

                   pvahtfssssdphtspevleaglak.......peaatgsvkkDvrEdlEm
                   p+a+    s +pht++e++++++a ++  ++ p+aa              
    KIAA1481   355 PEAS---ASASPHTPRERHSVTPAEgdlarpvPPAA-------------- 387  

                   EREAEEANRCPvNvAqPhvvRIGGRKRlTaEqKkkSYSEPEKlneVGSAP
                                       R+G R+RlT+EqKk+SYSEPEK+neVG   
    KIAA1481   388 --------------------RRGARRRLTPEQKKRSYSEPEKMNEVG--- 414  

                   iqkSCRsFaveeEaspavedeprnrtsesssgtfAdRrkfFEekgK<-*
                              eEa+pa+ +++rn   +++++++AdRr++FE++gK   
    KIAA1481   415 ---------IVEEAEPAPLGPQRNGM-RFPESSVADRRRLFERDGK    450  

PF08688.1.ls: domain 1 of 1, from 267 to 450: score 259.3, E = 7.2e-75
                   *->akLqKSkStvtLaaldaErEdgtsldrnksgDLSacpslegSFsntY
                      a+L++S+St++L  ++ ErE+ + +dr++s+   ++p+l+++Fs++Y
    KIAA1481   267    ARLLRSQSTFQL-SSEPEREPEW-RDRPGSP---ESPLLDAPFSRAY 308  

                   KekLKeAQarVLrATSFkRrDLepslLDnPaAesrpnyPeplearpemrp
                   ++++K+AQ+rVL+ATSF+RrDLe++     +  sr ++P+p +a+++ r+
    KIAA1481   309 RNSIKDAQSRVLGATSFRRRDLELGA----PVASRSWRPRPSSAHVGLRS 354  

                   pvahtfssssdphtspevleaglak.......peaatgsvkkDvrEdlEm
                   p+a+    s +pht++e++++++a ++  ++ p+aa              
    KIAA1481   355 PEAS---ASASPHTPRERHSVTPAEgdlarpvPPAA-------------- 387  

                   EREAEEANRCPvNvAqPhvvRIGGRKRlTaEqKkkSYSEPEKlneVGSAP
                                       R+G R+RlT+EqKk+SYSEPEK+neVG   
    KIAA1481   388 --------------------RRGARRRLTPEQKKRSYSEPEKMNEVG--- 414  

                   iqkSCRsFaveeEaspavedeprnrtsesssgtfAdRrkfFEekgK<-*
                              eEa+pa+ +++rn   +++++++AdRr++FE++gK   
    KIAA1481   415 ---------IVEEAEPAPLGPQRNGM-RFPESSVADRRRLFERDGK    450  

PF08687.1.fs: domain 1 of 1, from 1057 to 1340: score 556.9, E = 1.9e-164
                   *->rElVrkLsPDkSLadiLapksrpkptmdLvegCLFPqdeklleksyq
                      +E+V++   DkSLadiL+p+sr k+tmdL+eg LFP d+ ll +   
    KIAA1481  1057    KEIVHQ---DKSLADILDPDSRLKTTMDLMEG-LFPRDVNLLKENSV 1099 

                   rrRlLkrdastetleeaksdfqhfePgkpassliqtlsayyslSapkael
                   +r++  r++s +++e +  +       k+a+s +++++ayys+Sapkael
    KIAA1481  1100 KRKAIQRTVSSSGCEGKRNE------DKEAVSMLVNCPAYYSVSAPKAEL 1143 

                   lnklKdqpegqeleeglgedldndlqeKKvELiesLskKLqvLreeqesL
                   lnk+K +p +  +ee+     + d++eKK+ELi+sL++KL+ L+e+++sL
    KIAA1481  1144 LNKIKEMPAEVNEEEE-----QADVNEKKAELIGSLTHKLETLQEAKGSL 1188 

                   ledisaNtaLGeeveAkVkevCkPnEfeKFrmFigDLdkVvsLLLSLSgR
                   l+di+ N+aLGeeveA+++e+CkPnEf+K+rmFigDLdkVv+LLLSLSgR
    KIAA1481  1189 LTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVNLLLSLSGR 1238 

                   LARVEnALnridsdadpdErqsLeeKrqlLqrQhEDAKeLKenlDRRErv
                   LARVEn+L+++++da+ +Er+sL eKr+ L++QhEDA+eLKenlDRRErv
    KIAA1481  1239 LARVENVLSGLGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERV 1288 

                   VagiLaryLpaEqLaDYdhFvkmKaaLiieQReLedKIKLgEEQLkcLkd
                   V+giLa+yL++EqL+DY+hFvkmK++L+ieQR+L+dKIKLg+EQ+kcL++
    KIAA1481  1289 VLGILANYLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVKCLLE 1338 

                   sL<-*
                   sL   
    KIAA1481  1339 SL    1340 

PF08687.1.ls: domain 1 of 1, from 1057 to 1340: score 558.7, E = 5.3e-165
                   *->rElVrkLsPDkSLadiLapksrpkptmdLvegCLFPqdeklleksyq
                      +E+V++   DkSLadiL+p+sr k+tmdL+eg LFP d+ ll +   
    KIAA1481  1057    KEIVHQ---DKSLADILDPDSRLKTTMDLMEG-LFPRDVNLLKENSV 1099 

                   rrRlLkrdastetleeaksdfqhfePgkpassliqtlsayyslSapkael
                   +r++  r++s +++e +  +       k+a+s +++++ayys+Sapkael
    KIAA1481  1100 KRKAIQRTVSSSGCEGKRNE------DKEAVSMLVNCPAYYSVSAPKAEL 1143 

                   lnklKdqpegqeleeglgedldndlqeKKvELiesLskKLqvLreeqesL
                   lnk+K +p +  +ee+     + d++eKK+ELi+sL++KL+ L+e+++sL
    KIAA1481  1144 LNKIKEMPAEVNEEEE-----QADVNEKKAELIGSLTHKLETLQEAKGSL 1188 

                   ledisaNtaLGeeveAkVkevCkPnEfeKFrmFigDLdkVvsLLLSLSgR
                   l+di+ N+aLGeeveA+++e+CkPnEf+K+rmFigDLdkVv+LLLSLSgR
    KIAA1481  1189 LTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVNLLLSLSGR 1238 

                   LARVEnALnridsdadpdErqsLeeKrqlLqrQhEDAKeLKenlDRRErv
                   LARVEn+L+++++da+ +Er+sL eKr+ L++QhEDA+eLKenlDRRErv
    KIAA1481  1239 LARVENVLSGLGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERV 1288 

                   VagiLaryLpaEqLaDYdhFvkmKaaLiieQReLedKIKLgEEQLkcLkd
                   V+giLa+yL++EqL+DY+hFvkmK++L+ieQR+L+dKIKLg+EQ+kcL++
    KIAA1481  1289 VLGILANYLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVKCLLE 1338 

                   sL<-*
                   sL   
    KIAA1481  1339 SL    1340 

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