hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04060737/chunk_1/iprscan-20080502-04060737.nocrc
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Query sequence: KIAA1482
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07647.7.fs SAM domain (Sterile alpha motif)                52.3    1.1e-14   1
PF07647.7.ls SAM domain (Sterile alpha motif)                54.2    3.9e-13   1
PF00536.20.ls SAM domain (Sterile alpha motif)                14.2     0.0076   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.fs   1/1     205   276 ..     1    72 []    52.3  1.1e-14
PF07647.7.ls   1/1     205   276 ..     1    72 []    54.2  3.9e-13
PF00536.20.ls   1/1     206   274 ..     1    65 []    14.2   0.0076

Alignments of top-scoring domains:
PF07647.7.fs: domain 1 of 1, from 205 to 276: score 52.3, E = 1.1e-14
                   *->veswslesvaeWLe.siglegqYkdnFsdqgitglelll.lrlteed
                      v++w+le++ +WL + + l +qY+ nF+d+++ g  l + +  + ++
    KIAA1482   205    VHNWTLEDTLQWLIeFVEL-PQYEKNFRDNNVKGTTLPRiAVHEPSF 250  

                   LaklalGitsvghRkkilkkiqelkqq<-*
                   + +++l+i++  hR+k+  k+ ++  +   
    KIAA1482   251 M-ISQLKISDRSHRQKLQLKALDVVLF    276  

PF07647.7.ls: domain 1 of 1, from 205 to 276: score 54.2, E = 3.9e-13
                   *->veswslesvaeWLe.siglegqYkdnFsdqgitglelll.lrlteed
                      v++w+le++ +WL + + l +qY+ nF+d+++ g  l + +  + ++
    KIAA1482   205    VHNWTLEDTLQWLIeFVEL-PQYEKNFRDNNVKGTTLPRiAVHEPSF 250  

                   LaklalGitsvghRkkilkkiqelkqq<-*
                   + +++l+i++  hR+k+  k+ ++  +   
    KIAA1482   251 M-ISQLKISDRSHRQKLQLKALDVVLF    276  

PF00536.20.ls: domain 1 of 1, from 206 to 274: score 14.2, E = 0.0076
                   *->dgwsfesVgeWLesi.glgqYidnFlsagyidgdtllqlteeD....
                      ++w+ e+  +WL ++  l+qY++nF + + + g tl+++   +++  
    KIAA1482   206    HNWTLEDTLQWLIEFvELPQYEKNF-RDNNVKGTTLPRIAVHEpsfm 251  

                   LedlGvtllGHrkKIlssIqgLk<-*
                   + +l++    Hr+K+++   +     
    KIAA1482   252 ISQLKISDRSHRQKLQLKALDVV    274  

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