hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04092543/chunk_1/iprscan-20080502-04092543.nocrc
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Query sequence: KIAA1484
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00560.23.ls Leucine Rich Repeat 66.4 8.2e-17 6
PF07679.6.fs Immunoglobulin I-set domain 56.7 6.3e-16 1
PF07679.6.ls Immunoglobulin I-set domain 58.6 1.9e-14 1
PF00560.23.fs Leucine Rich Repeat 55.3 4.5e-14 6
PF00047.15.fs Immunoglobulin domain 39.2 5.2e-10 1
PF00047.15.ls Immunoglobulin domain 41.1 3.6e-09 1
PF00041.11.fs Fibronectin type III domain 32.9 7.9e-09 1
PF00041.11.ls Fibronectin type III domain 34.5 3.3e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00560.23.ls 1/6 19 41 .. 1 24 [] 12.6 1.1
PF00560.23.ls 2/6 43 65 .. 1 24 [] 7.9 8.9
PF00560.23.ls 3/6 67 89 .. 1 24 [] 13.9 0.55
PF00560.23.fs 3/6 67 89 .. 1 24 [] 12.0 0.031
PF00560.23.ls 4/6 92 114 .. 1 24 [] 12.3 1.3
PF00560.23.ls 5/6 116 138 .. 1 24 [] 12.6 1.1
PF07679.6.ls 1/1 228 316 .. 1 96 [] 58.6 1.9e-14
PF07679.6.fs 1/1 228 316 .. 1 96 [] 56.7 6.3e-16
PF00047.15.fs 1/1 243 301 .. 1 65 [] 39.2 5.2e-10
PF00047.15.ls 1/1 243 301 .. 1 65 [] 41.1 3.6e-09
PF00041.11.ls 1/1 351 431 .. 1 84 [] 34.5 3.3e-07
PF00041.11.fs 1/1 355 431 .. 5 84 .] 32.9 7.9e-09
Alignments of top-scoring domains:
PF00560.23.ls: domain 1 of 6, from 19 to 41: score 12.6, E = 1.1
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
+L +L Ls+ N + g ++++++ +l
KIAA1484 19 SLVHLTLSR-N-TI-GQVAAGaFaDL 41
PF00560.23.ls: domain 2 of 6, from 43 to 65: score 7.9, E = 8.9
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
L+ L+L++ N +l ++ + l++l
KIAA1484 43 ALRALHLDS-N-RLA-EVRGDqLrGL 65
PF00560.23.ls: domain 3 of 6, from 67 to 89: score 13.9, E = 0.55
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
nL++L L++ N ++ + ++s +++ +
KIAA1484 67 NLRHLILGN-N-QI-RRVESAaFdAF 89
PF00560.23.fs: domain 3 of 6, from 67 to 89: score 12.0, E = 0.031
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
nL++L L++ N ++ + ++s +++ +
KIAA1484 67 NLRHLILGN-N-QI-RRVESAaFdAF 89
PF00560.23.ls: domain 4 of 6, from 92 to 114: score 12.3, E = 1.3
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
++e LdLs+ N +l+ lp ++++ +
KIAA1484 92 TVEDLDLSY-N-NLE-ALPWEaVgQM 114
PF00560.23.ls: domain 5 of 6, from 116 to 138: score 12.6, E = 1.1
*->nLeeLdLsgCNpsltgslpss.l.nl<-*
nL +L L++ N + ++++++++ l
KIAA1484 116 NLNTLTLDH-N-LI-DHIAEGtFvQL 138
PF07679.6.ls: domain 1 of 1, from 228 to 316: score 58.6, E = 1.9e-14
*->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl
P +t++ + ++ V eG+++++ C++ G+PeP V W +G+ l +
KIAA1484 228 PLITRQAgGRALVVEGQAVSLRCRAVGDPEPVVHWVAPdGRLLGN-- 272
lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt
s+r +v+ dg tL + + +DsG+ tC+A+N aGea+a +e+
KIAA1484 273 --SSRTRVRGDG-----TLDVTITTLRDSGTFTCIASNAAGEATAPVEVC 315
V<-*
V
KIAA1484 316 V 316
PF07679.6.fs: domain 1 of 1, from 228 to 316: score 56.7, E = 6.3e-16
*->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl
P +t++ + ++ V eG+++++ C++ G+PeP V W +G+ l +
KIAA1484 228 PLITRQAgGRALVVEGQAVSLRCRAVGDPEPVVHWVAPdGRLLGN-- 272
lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt
s+r +v+ dg tL + + +DsG+ tC+A+N aGea+a +e+
KIAA1484 273 --SSRTRVRGDG-----TLDVTITTLRDSGTFTCIASNAAGEATAPVEVC 315
V<-*
V
KIAA1484 316 V 316
PF00047.15.fs: domain 1 of 1, from 243 to 301: score 39.2, E = 5.2e-10
*->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
G+ v+L+C++ g+p++ v+W +++l + + t ++ +g+
KIAA1484 243 GQAVSLRCRA--VGDPEPVVHWVAPDGrLLgNSSRTRVRGDGT---- 283
tsLtitnvtpeDggtYtCvv<-*
L +t +t D+gt+tC +
KIAA1484 284 --LDVTITTLRDSGTFTCIA 301
PF00047.15.ls: domain 1 of 1, from 243 to 301: score 41.1, E = 3.6e-09
*->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
G+ v+L+C++ g+p++ v+W +++l + + t ++ +g+
KIAA1484 243 GQAVSLRCRA--VGDPEPVVHWVAPDGrLLgNSSRTRVRGDGT---- 283
tsLtitnvtpeDggtYtCvv<-*
L +t +t D+gt+tC +
KIAA1484 284 --LDVTITTLRDSGTFTCIA 301
PF00041.11.ls: domain 1 of 1, from 351 to 431: score 34.5, E = 3.3e-07
*->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk
a ++l + ++ts+s+ ++W + ++ i Y+v+y ++++++ +
KIAA1484 351 SAAERRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDS-LV 396
eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
+++p+t+ ++ +++L +g+ Y ++V Av ++ + +
KIAA1484 397 YRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDD--GAT 431
PF00041.11.fs: domain 1 of 1, from 355 to 431: score 32.9, E = 7.9e-09
*->tnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewkeltv
++l + ++ts+s+ ++W + ++ i Y+v+y ++++++ + +++
KIAA1484 355 RRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDS-LVYRMI 400
pgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
p+t+ ++ +++L +g+ Y ++V Av ++ + +
KIAA1484 401 PSTSQTFLVNDLAAGRAYDLCVLAVYDD--GAT 431
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