hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04092543/chunk_1/iprscan-20080502-04092543.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1484 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 66.4 8.2e-17 6 PF07679.6.fs Immunoglobulin I-set domain 56.7 6.3e-16 1 PF07679.6.ls Immunoglobulin I-set domain 58.6 1.9e-14 1 PF00560.23.fs Leucine Rich Repeat 55.3 4.5e-14 6 PF00047.15.fs Immunoglobulin domain 39.2 5.2e-10 1 PF00047.15.ls Immunoglobulin domain 41.1 3.6e-09 1 PF00041.11.fs Fibronectin type III domain 32.9 7.9e-09 1 PF00041.11.ls Fibronectin type III domain 34.5 3.3e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 1/6 19 41 .. 1 24 [] 12.6 1.1 PF00560.23.ls 2/6 43 65 .. 1 24 [] 7.9 8.9 PF00560.23.ls 3/6 67 89 .. 1 24 [] 13.9 0.55 PF00560.23.fs 3/6 67 89 .. 1 24 [] 12.0 0.031 PF00560.23.ls 4/6 92 114 .. 1 24 [] 12.3 1.3 PF00560.23.ls 5/6 116 138 .. 1 24 [] 12.6 1.1 PF07679.6.ls 1/1 228 316 .. 1 96 [] 58.6 1.9e-14 PF07679.6.fs 1/1 228 316 .. 1 96 [] 56.7 6.3e-16 PF00047.15.fs 1/1 243 301 .. 1 65 [] 39.2 5.2e-10 PF00047.15.ls 1/1 243 301 .. 1 65 [] 41.1 3.6e-09 PF00041.11.ls 1/1 351 431 .. 1 84 [] 34.5 3.3e-07 PF00041.11.fs 1/1 355 431 .. 5 84 .] 32.9 7.9e-09 Alignments of top-scoring domains: PF00560.23.ls: domain 1 of 6, from 19 to 41: score 12.6, E = 1.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L +L Ls+ N + g ++++++ +l KIAA1484 19 SLVHLTLSR-N-TI-GQVAAGaFaDL 41 PF00560.23.ls: domain 2 of 6, from 43 to 65: score 7.9, E = 8.9 *->nLeeLdLsgCNpsltgslpss.l.nl<-* L+ L+L++ N +l ++ + l++l KIAA1484 43 ALRALHLDS-N-RLA-EVRGDqLrGL 65 PF00560.23.ls: domain 3 of 6, from 67 to 89: score 13.9, E = 0.55 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L L++ N ++ + ++s +++ + KIAA1484 67 NLRHLILGN-N-QI-RRVESAaFdAF 89 PF00560.23.fs: domain 3 of 6, from 67 to 89: score 12.0, E = 0.031 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L L++ N ++ + ++s +++ + KIAA1484 67 NLRHLILGN-N-QI-RRVESAaFdAF 89 PF00560.23.ls: domain 4 of 6, from 92 to 114: score 12.3, E = 1.3 *->nLeeLdLsgCNpsltgslpss.l.nl<-* ++e LdLs+ N +l+ lp ++++ + KIAA1484 92 TVEDLDLSY-N-NLE-ALPWEaVgQM 114 PF00560.23.ls: domain 5 of 6, from 116 to 138: score 12.6, E = 1.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL +L L++ N + ++++++++ l KIAA1484 116 NLNTLTLDH-N-LI-DHIAEGtFvQL 138 PF07679.6.ls: domain 1 of 1, from 228 to 316: score 58.6, E = 1.9e-14 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl P +t++ + ++ V eG+++++ C++ G+PeP V W +G+ l + KIAA1484 228 PLITRQAgGRALVVEGQAVSLRCRAVGDPEPVVHWVAPdGRLLGN-- 272 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt s+r +v+ dg tL + + +DsG+ tC+A+N aGea+a +e+ KIAA1484 273 --SSRTRVRGDG-----TLDVTITTLRDSGTFTCIASNAAGEATAPVEVC 315 V<-* V KIAA1484 316 V 316 PF07679.6.fs: domain 1 of 1, from 228 to 316: score 56.7, E = 6.3e-16 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl P +t++ + ++ V eG+++++ C++ G+PeP V W +G+ l + KIAA1484 228 PLITRQAgGRALVVEGQAVSLRCRAVGDPEPVVHWVAPdGRLLGN-- 272 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt s+r +v+ dg tL + + +DsG+ tC+A+N aGea+a +e+ KIAA1484 273 --SSRTRVRGDG-----TLDVTITTLRDSGTFTCIASNAAGEATAPVEVC 315 V<-* V KIAA1484 316 V 316 PF00047.15.fs: domain 1 of 1, from 243 to 301: score 39.2, E = 5.2e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v+L+C++ g+p++ v+W +++l + + t ++ +g+ KIAA1484 243 GQAVSLRCRA--VGDPEPVVHWVAPDGrLLgNSSRTRVRGDGT---- 283 tsLtitnvtpeDggtYtCvv<-* L +t +t D+gt+tC + KIAA1484 284 --LDVTITTLRDSGTFTCIA 301 PF00047.15.ls: domain 1 of 1, from 243 to 301: score 41.1, E = 3.6e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v+L+C++ g+p++ v+W +++l + + t ++ +g+ KIAA1484 243 GQAVSLRCRA--VGDPEPVVHWVAPDGrLLgNSSRTRVRGDGT---- 283 tsLtitnvtpeDggtYtCvv<-* L +t +t D+gt+tC + KIAA1484 284 --LDVTITTLRDSGTFTCIA 301 PF00041.11.ls: domain 1 of 1, from 351 to 431: score 34.5, E = 3.3e-07 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk a ++l + ++ts+s+ ++W + ++ i Y+v+y ++++++ + KIAA1484 351 SAAERRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDS-LV 396 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +++p+t+ ++ +++L +g+ Y ++V Av ++ + + KIAA1484 397 YRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDD--GAT 431 PF00041.11.fs: domain 1 of 1, from 355 to 431: score 32.9, E = 7.9e-09 *->tnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewkeltv ++l + ++ts+s+ ++W + ++ i Y+v+y ++++++ + +++ KIAA1484 355 RRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDS-LVYRMI 400 pgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* p+t+ ++ +++L +g+ Y ++V Av ++ + + KIAA1484 401 PSTSQTFLVNDLAAGRAYDLCVLAVYDD--GAT 431 //