hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04092543/chunk_1/iprscan-20080502-04092543.nocrc
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Query sequence: KIAA1484
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             66.4    8.2e-17   6
PF07679.6.fs Immunoglobulin I-set domain                     56.7    6.3e-16   1
PF07679.6.ls Immunoglobulin I-set domain                     58.6    1.9e-14   1
PF00560.23.fs Leucine Rich Repeat                             55.3    4.5e-14   6
PF00047.15.fs Immunoglobulin domain                           39.2    5.2e-10   1
PF00047.15.ls Immunoglobulin domain                           41.1    3.6e-09   1
PF00041.11.fs Fibronectin type III domain                     32.9    7.9e-09   1
PF00041.11.ls Fibronectin type III domain                     34.5    3.3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   1/6      19    41 ..     1    24 []    12.6      1.1
PF00560.23.ls   2/6      43    65 ..     1    24 []     7.9      8.9
PF00560.23.ls   3/6      67    89 ..     1    24 []    13.9     0.55
PF00560.23.fs   3/6      67    89 ..     1    24 []    12.0    0.031
PF00560.23.ls   4/6      92   114 ..     1    24 []    12.3      1.3
PF00560.23.ls   5/6     116   138 ..     1    24 []    12.6      1.1
PF07679.6.ls   1/1     228   316 ..     1    96 []    58.6  1.9e-14
PF07679.6.fs   1/1     228   316 ..     1    96 []    56.7  6.3e-16
PF00047.15.fs   1/1     243   301 ..     1    65 []    39.2  5.2e-10
PF00047.15.ls   1/1     243   301 ..     1    65 []    41.1  3.6e-09
PF00041.11.ls   1/1     351   431 ..     1    84 []    34.5  3.3e-07
PF00041.11.fs   1/1     355   431 ..     5    84 .]    32.9  7.9e-09

Alignments of top-scoring domains:
PF00560.23.ls: domain 1 of 6, from 19 to 41: score 12.6, E = 1.1
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L +L Ls+ N  + g ++++++ +l   
    KIAA1484    19    SLVHLTLSR-N-TI-GQVAAGaFaDL    41   

PF00560.23.ls: domain 2 of 6, from 43 to 65: score 7.9, E = 8.9
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L+ L+L++ N +l  ++  + l++l   
    KIAA1484    43    ALRALHLDS-N-RLA-EVRGDqLrGL    65   

PF00560.23.ls: domain 3 of 6, from 67 to 89: score 13.9, E = 0.55
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++L L++ N ++ + ++s +++ +   
    KIAA1484    67    NLRHLILGN-N-QI-RRVESAaFdAF    89   

PF00560.23.fs: domain 3 of 6, from 67 to 89: score 12.0, E = 0.031
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL++L L++ N ++ + ++s +++ +   
    KIAA1484    67    NLRHLILGN-N-QI-RRVESAaFdAF    89   

PF00560.23.ls: domain 4 of 6, from 92 to 114: score 12.3, E = 1.3
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      ++e LdLs+ N +l+  lp ++++ +   
    KIAA1484    92    TVEDLDLSY-N-NLE-ALPWEaVgQM    114  

PF00560.23.ls: domain 5 of 6, from 116 to 138: score 12.6, E = 1.1
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL +L L++ N  + ++++++++  l   
    KIAA1484   116    NLNTLTLDH-N-LI-DHIAEGtFvQL    138  

PF07679.6.ls: domain 1 of 1, from 228 to 316: score 58.6, E = 1.9e-14
                   *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl
                      P +t++ + ++ V eG+++++ C++ G+PeP V W   +G+ l +  
    KIAA1484   228    PLITRQAgGRALVVEGQAVSLRCRAVGDPEPVVHWVAPdGRLLGN-- 272  

                   lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt
                     s+r +v+ dg     tL +   + +DsG+ tC+A+N aGea+a +e+ 
    KIAA1484   273 --SSRTRVRGDG-----TLDVTITTLRDSGTFTCIASNAAGEATAPVEVC 315  

                   V<-*
                   V   
    KIAA1484   316 V    316  

PF07679.6.fs: domain 1 of 1, from 228 to 316: score 56.7, E = 6.3e-16
                   *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl
                      P +t++ + ++ V eG+++++ C++ G+PeP V W   +G+ l +  
    KIAA1484   228    PLITRQAgGRALVVEGQAVSLRCRAVGDPEPVVHWVAPdGRLLGN-- 272  

                   lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt
                     s+r +v+ dg     tL +   + +DsG+ tC+A+N aGea+a +e+ 
    KIAA1484   273 --SSRTRVRGDG-----TLDVTITTLRDSGTFTCIASNAAGEATAPVEVC 315  

                   V<-*
                   V   
    KIAA1484   316 V    316  

PF00047.15.fs: domain 1 of 1, from 243 to 301: score 39.2, E = 5.2e-10
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ v+L+C++   g+p++ v+W   +++l +  + t ++ +g+    
    KIAA1484   243    GQAVSLRCRA--VGDPEPVVHWVAPDGrLLgNSSRTRVRGDGT---- 283  

                   tsLtitnvtpeDggtYtCvv<-*
                     L +t +t  D+gt+tC +   
    KIAA1484   284 --LDVTITTLRDSGTFTCIA    301  

PF00047.15.ls: domain 1 of 1, from 243 to 301: score 41.1, E = 3.6e-09
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ v+L+C++   g+p++ v+W   +++l +  + t ++ +g+    
    KIAA1484   243    GQAVSLRCRA--VGDPEPVVHWVAPDGrLLgNSSRTRVRGDGT---- 283  

                   tsLtitnvtpeDggtYtCvv<-*
                     L +t +t  D+gt+tC +   
    KIAA1484   284 --LDVTITTLRDSGTFTCIA    301  

PF00041.11.ls: domain 1 of 1, from 351 to 431: score 34.5, E = 3.3e-07
                   *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk
                        a ++l + ++ts+s+ ++W + ++   i  Y+v+y ++++++  +
    KIAA1484   351    SAAERRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDS-LV 396  

                   eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
                    +++p+t+ ++ +++L +g+ Y ++V Av ++  + +   
    KIAA1484   397 YRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDD--GAT    431  

PF00041.11.fs: domain 1 of 1, from 355 to 431: score 32.9, E = 7.9e-09
                   *->tnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewkeltv
                      ++l + ++ts+s+ ++W + ++   i  Y+v+y ++++++  + +++
    KIAA1484   355    RRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDS-LVYRMI 400  

                   pgtttsytltgLkPgteYtvrVqAvnggGGpeS<-*
                   p+t+ ++ +++L +g+ Y ++V Av ++  + +   
    KIAA1484   401 PSTSQTFLVNDLAAGRAYDLCVLAVYDD--GAT    431  

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