hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04174074/chunk_1/iprscan-20080502-04174074.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1489 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07707.5.ls BTB And C-terminal Kelch 125.2 1.6e-34 1 PF07707.5.fs BTB And C-terminal Kelch 123.3 6.4e-34 1 PF01344.15.fs Kelch motif 91.7 3.1e-25 4 PF01344.15.ls Kelch motif 92.2 1.5e-24 4 PF07646.5.fs Kelch motif 35.9 6.6e-09 3 PF07646.5.ls Kelch motif 39.2 1.3e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07707.5.fs 1/1 21 122 .. 1 103 [] 123.3 6.4e-34 PF07707.5.ls 1/1 21 122 .. 1 103 [] 125.2 1.6e-34 PF01344.15.ls 1/4 193 255 .. 1 45 [] 13.8 0.099 PF01344.15.fs 1/4 198 255 .. 6 45 .] 15.6 0.0013 PF07646.5.fs 2/3 257 304 .. 1 54 [] 21.6 5.2e-05 PF01344.15.ls 2/4 257 304 .. 1 45 [] 45.0 2.3e-10 PF01344.15.fs 2/4 257 304 .. 1 45 [] 43.0 2.1e-11 PF07646.5.ls 1/2 257 304 .. 1 54 [] 23.5 0.0007 PF01344.15.ls 4/4 346 404 .. 1 45 [] 31.3 3.1e-06 PF07646.5.ls 2/2 346 404 .. 1 54 [] 15.7 0.16 PF01344.15.fs 4/4 346 404 .. 1 45 [] 29.3 1.7e-07 Alignments of top-scoring domains: PF07707.5.fs: domain 1 of 1, from 21 to 122: score 123.3, E = 6.4e-34 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ +++fAd ++ceeL+++A+r++++ F++V++++ F+qLs++ Li+ KIAA1489 21 CVRLLSFADLFSCEELKQSAKRMVEHKFTAVYHQDAFMQLSHDLLID 67 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +LssD LnV++Ee+V eA+m W+ ++ e+R ++l+ +Ls++R+ Ls+ KIAA1489 68 ILSSDNLNVEKEETVREAAMLWLEYNTESRSQYLSSVLSQIRIDALSEVT 117 Llevve<-* ++++ KIAA1489 118 -QRAWF 122 PF07707.5.ls: domain 1 of 1, from 21 to 122: score 125.2, E = 1.6e-34 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ +++fAd ++ceeL+++A+r++++ F++V++++ F+qLs++ Li+ KIAA1489 21 CVRLLSFADLFSCEELKQSAKRMVEHKFTAVYHQDAFMQLSHDLLID 67 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +LssD LnV++Ee+V eA+m W+ ++ e+R ++l+ +Ls++R+ Ls+ KIAA1489 68 ILSSDNLNVEKEETVREAAMLWLEYNTESRSQYLSSVLSQIRIDALSEVT 117 Llevve<-* ++++ KIAA1489 118 -QRAWF 122 PF01344.15.ls: domain 1 of 4, from 193 to 255: score 13.8, E = 0.099 *->pRsgagvvvldgkiYviGGydg..................qslnsve +vv+ d+ iY++GG+ + ++++++++++++ ++ + +n+++ KIAA1489 193 LHKVGTVVTPDNDIYIAGGQVPlkntktnhsktsklqtafRTVNCFY 239 vYDpetntWtklpsmp<-* +D ntW + ++m KIAA1489 240 WFDAQQNTWFPKTPML 255 PF01344.15.fs: domain 1 of 4, from 198 to 255: score 15.6, E = 0.0013 *->gvvvldgkiYviGGydg..................qslnsvevYDpe +vv+ d+ iY++GG+ + ++++++++++++ ++ + +n+++ +D KIAA1489 198 TVVTPDNDIYIAGGQVPlkntktnhsktsklqtafRTVNCFYWFDAQ 244 tntWtklpsmp<-* ntW + ++m KIAA1489 245 QNTWFPKTPML 255 PF07646.5.fs: domain 2 of 3, from 257 to 304: score 21.6, E = 5.2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++v+++g +y +GG + +g + +++ ++d+e+ +W KIAA1489 257 VRIKPSLVCCEGYIYAIGGD------SVGGELNRRTVERYDTEKDEW 297 eklpalp<-* + +++lp KIAA1489 298 TMVSPLP 304 PF01344.15.ls: domain 2 of 4, from 257 to 304: score 45.0, E = 2.3e-10 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R + v+++g+iY+iGG + +++ ++ve+YD+e+++Wt+++++ KIAA1489 257 VRIKPSLVCCEGYIYAIGGDSVggeLNRRTVERYDTEKDEWTMVSPL 303 p<-* p KIAA1489 304 P 304 PF01344.15.fs: domain 2 of 4, from 257 to 304: score 43.0, E = 2.1e-11 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R + v+++g+iY+iGG + +++ ++ve+YD+e+++Wt+++++ KIAA1489 257 VRIKPSLVCCEGYIYAIGGDSVggeLNRRTVERYDTEKDEWTMVSPL 303 p<-* p KIAA1489 304 P 304 PF07646.5.ls: domain 1 of 2, from 257 to 304: score 23.5, E = 0.0007 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++v+++g +y +GG + +g + +++ ++d+e+ +W KIAA1489 257 VRIKPSLVCCEGYIYAIGGD------SVGGELNRRTVERYDTEKDEW 297 eklpalp<-* + +++lp KIAA1489 298 TMVSPLP 304 PF01344.15.ls: domain 4 of 4, from 346 to 404: score 31.3, E = 3.1e-06 *->pRsgagvvvldgkiYviGGydg..............qslnsvevYDp Rs+a+++++++ki+ iGG ++++ + ++++ + s+ +ve+YD+ KIAA1489 346 SRSFASAAAFGDKIFYIGGLHIatnsgirlpsgtvdGSSVTVEIYDV 392 etntWtklpsmp<-* +n+W++ ++ p KIAA1489 393 NKNEWKMAANIP 404 PF07646.5.ls: domain 2 of 2, from 346 to 404: score 15.7, E = 0.16 *->pryphasvvpggklyvvGGs....fkgnrgtgngde.sssdllvldp +r+ +++ g+k++ +GG + ++ g r + + +++ss ++ ++d KIAA1489 346 SRSFASAAAFGDKIFYIGGLhiatNSGIRLPSGTVDgSSVTVEIYDV 392 etnvWeklpalp<-* ++n+W+ + +p KIAA1489 393 NKNEWKMAANIP 404 PF01344.15.fs: domain 4 of 4, from 346 to 404: score 29.3, E = 1.7e-07 *->pRsgagvvvldgkiYviGGydg..............qslnsvevYDp Rs+a+++++++ki+ iGG ++++ + ++++ + s+ +ve+YD+ KIAA1489 346 SRSFASAAAFGDKIFYIGGLHIatnsgirlpsgtvdGSSVTVEIYDV 392 etntWtklpsmp<-* +n+W++ ++ p KIAA1489 393 NKNEWKMAANIP 404 //