hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04205582/chunk_1/iprscan-20080502-04205582.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1490 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 354.6 1.5e-103 6 PF01344.15.fs Kelch motif 350.9 1.9e-102 6 PF07707.5.ls BTB And C-terminal Kelch 168.7 1.4e-47 1 PF07707.5.fs BTB And C-terminal Kelch 166.7 5.4e-47 1 PF07646.5.ls Kelch motif 154.4 2.8e-43 5 PF07646.5.fs Kelch motif 144.9 1.9e-40 5 PF00651.21.ls BTB/POZ domain 128.5 1.7e-35 1 PF00651.21.fs BTB/POZ domain 126.8 5.8e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 203 310 .. 1 135 [] 126.8 5.8e-35 PF00651.21.ls 1/1 203 310 .. 1 135 [] 128.5 1.7e-35 PF07707.5.ls 1/1 315 416 .. 1 103 [] 168.7 1.4e-47 PF07707.5.fs 1/1 315 416 .. 1 103 [] 166.7 5.4e-47 PF01344.15.ls 1/6 450 494 .. 1 45 [] 22.8 0.0011 PF01344.15.fs 1/6 460 494 .. 12 45 .] 29.2 1.8e-07 PF01344.15.fs 2/6 496 541 .. 1 45 [] 72.0 1.2e-19 PF07646.5.ls 1/5 496 541 .. 1 54 [] 38.8 1.7e-08 PF01344.15.ls 2/6 496 541 .. 1 45 [] 74.0 4.3e-19 PF07646.5.fs 1/5 496 541 .. 1 54 [] 37.0 3.4e-09 PF01344.15.fs 3/6 543 588 .. 1 45 [] 63.1 4.1e-17 PF07646.5.ls 2/5 543 588 .. 1 54 [] 26.8 6.9e-05 PF07646.5.fs 2/5 543 588 .. 1 54 [] 25.0 6.2e-06 PF01344.15.ls 3/6 543 588 .. 1 45 [] 65.2 2e-16 PF07646.5.ls 3/5 590 635 .. 1 54 [] 28.7 1.8e-05 PF01344.15.fs 4/6 590 635 .. 1 45 [] 62.6 5.8e-17 PF01344.15.ls 4/6 590 635 .. 1 45 [] 64.6 2.9e-16 PF07646.5.fs 3/5 590 635 .. 1 54 [] 26.9 1.9e-06 PF01344.15.fs 5/6 637 688 .. 1 45 [] 59.6 4.2e-16 PF07646.5.fs 4/5 637 688 .. 1 54 [] 23.3 1.8e-05 PF01344.15.ls 5/6 637 688 .. 1 45 [] 61.6 2.4e-15 PF07646.5.ls 4/5 637 688 .. 1 54 [] 25.2 0.00021 PF07646.5.fs 5/5 690 735 .. 1 54 [] 32.9 4.5e-08 PF01344.15.fs 6/6 690 735 .. 1 45 [] 64.3 1.9e-17 PF01344.15.ls 6/6 690 735 .. 1 45 [] 66.3 9e-17 PF07646.5.ls 5/5 690 735 .. 1 54 [] 34.7 2.9e-07 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 203 to 310: score 126.8, E = 5.8e-35 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ++ +kq +lcDV+L vg ++k++AH++vL++ S+YF a+ KIAA1490 203 MESYLKQQQLCDVILIVG--------NRKIPAHRLVLSSVSDYFAAM 241 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ +e++++ ei +e+++p ++ l++f+Ytg l+++ KIAA1490 242 FTSD------VCEAKQE-EIKMEGIDPNALWDLVQFAYTGCLELK----- 279 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+++e+lLaaA +llq+p +v++C++fl k l KIAA1490 280 ------EDTIENLLAAA-CLLQLPQVVEVCCHFLMKLL 310 PF00651.21.ls: domain 1 of 1, from 203 to 310: score 128.5, E = 1.7e-35 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ++ +kq +lcDV+L vg ++k++AH++vL++ S+YF a+ KIAA1490 203 MESYLKQQQLCDVILIVG--------NRKIPAHRLVLSSVSDYFAAM 241 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ +e++++ ei +e+++p ++ l++f+Ytg l+++ KIAA1490 242 FTSD------VCEAKQE-EIKMEGIDPNALWDLVQFAYTGCLELK----- 279 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+++e+lLaaA +llq+p +v++C++fl k l KIAA1490 280 ------EDTIENLLAAA-CLLQLPQVVEVCCHFLMKLL 310 PF07707.5.ls: domain 1 of 1, from 315 to 416: score 168.7, E = 1.4e-47 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr fAda+gc eL+++A++++++n++eV++++EFl L++e+L++ KIAA1490 315 CLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHK 361 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL+sD+ nVp+Ee++f+A+m Wvk+d ++R+ +l+ LL+ +RLpLL+p+ KIAA1490 362 LLASDDVNVPDEETIFHALMMWVKYDMQSRCNDLSMLLAFIRLPLLPPQI 411 Llevve<-* L + +e KIAA1490 412 LAD-LE 416 PF07707.5.fs: domain 1 of 1, from 315 to 416: score 166.7, E = 5.4e-47 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr fAda+gc eL+++A++++++n++eV++++EFl L++e+L++ KIAA1490 315 CLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHK 361 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL+sD+ nVp+Ee++f+A+m Wvk+d ++R+ +l+ LL+ +RLpLL+p+ KIAA1490 362 LLASDDVNVPDEETIFHALMMWVKYDMQSRCNDLSMLLAFIRLPLLPPQI 411 Llevve<-* L + +e KIAA1490 412 LAD-LE 416 PF01344.15.ls: domain 1 of 6, from 450 to 494: score 22.8, E = 0.0011 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR+ ++ g +Y++GG+d++ ++e+YD++tn W + m+ KIAA1490 450 PRTKPRKSTV-GTLYAVGGMDNnKGATTIEKYDLRTNLWIQAGMMN 494 -* KIAA1490 - - PF01344.15.fs: domain 1 of 6, from 460 to 494: score 29.2, E = 1.8e-07 *->gkiYviGGydg.qslnsvevYDpetntWtklpsmp<-* g +Y++GG+d++ ++e+YD++tn W + m+ KIAA1490 460 GTLYAVGGMDNnKGATTIEKYDLRTNLWIQAGMMN 494 PF01344.15.fs: domain 2 of 6, from 496 to 541: score 72.0, E = 1.2e-19 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R +gv+v+d+k++viGG+dg ln+ve+Y+p+t+tWt lp+m+ KIAA1490 496 RRLQFGVAVIDDKLFVIGGRDGlKTLNTVECYNPKTKTWTVLPPMS 541 -* KIAA1490 - - PF07646.5.ls: domain 1 of 5, from 496 to 541: score 38.8, E = 1.7e-08 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++v+++kl+v+GG+ +g ++++ +++p+t++W KIAA1490 496 RRLQFGVAVIDDKLFVIGGR--------DGLKTLNTVECYNPKTKTW 534 eklpalp<-* + lp++ KIAA1490 535 TVLPPMS 541 PF01344.15.ls: domain 2 of 6, from 496 to 541: score 74.0, E = 4.3e-19 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R +gv+v+d+k++viGG+dg ln+ve+Y+p+t+tWt lp+m+ KIAA1490 496 RRLQFGVAVIDDKLFVIGGRDGlKTLNTVECYNPKTKTWTVLPPMS 541 -* KIAA1490 - - PF07646.5.fs: domain 1 of 5, from 496 to 541: score 37.0, E = 3.4e-09 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++v+++kl+v+GG+ +g ++++ +++p+t++W KIAA1490 496 RRLQFGVAVIDDKLFVIGGR--------DGLKTLNTVECYNPKTKTW 534 eklpalp<-* + lp++ KIAA1490 535 TVLPPMS 541 PF01344.15.fs: domain 3 of 6, from 543 to 588: score 63.1, E = 4.1e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv+vl+g iY++GG+dg ++ln+ve++Dp +++Wt+++sm+ KIAA1490 543 HRHGLGVTVLEGPIYAVGGHDGwSYLNTVERWDPQSQQWTFVASMS 588 -* KIAA1490 - - PF07646.5.ls: domain 2 of 5, from 543 to 588: score 26.8, E = 6.9e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v++g +y vGG+ +g ++++++ ++dp++++W KIAA1490 543 HRHGLGVTVLEGPIYAVGGH--------DGWSYLNTVERWDPQSQQW 581 eklpalp<-* + ++++ KIAA1490 582 TFVASMS 588 PF07646.5.fs: domain 2 of 5, from 543 to 588: score 25.0, E = 6.2e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v++g +y vGG+ +g ++++++ ++dp++++W KIAA1490 543 HRHGLGVTVLEGPIYAVGGH--------DGWSYLNTVERWDPQSQQW 581 eklpalp<-* + ++++ KIAA1490 582 TFVASMS 588 PF01344.15.ls: domain 3 of 6, from 543 to 588: score 65.2, E = 2e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv+vl+g iY++GG+dg ++ln+ve++Dp +++Wt+++sm+ KIAA1490 543 HRHGLGVTVLEGPIYAVGGHDGwSYLNTVERWDPQSQQWTFVASMS 588 -* KIAA1490 - - PF07646.5.ls: domain 3 of 5, from 590 to 635: score 28.7, E = 1.8e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ + ++ ++gkly+vGG+ +g++ +s++ ++dp tn+W KIAA1490 590 ARSTVGVAALNGKLYSVGGR--------DGSSCLSSMEYYDPHTNKW 628 eklpalp<-* +++++ KIAA1490 629 NMCAPMC 635 PF01344.15.fs: domain 4 of 6, from 590 to 635: score 62.6, E = 5.8e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs +gv++l+gk+Y +GG+dg+++l+s e+YDp tn+W ++++m KIAA1490 590 ARSTVGVAALNGKLYSVGGRDGsSCLSSMEYYDPHTNKWNMCAPMC 635 -* KIAA1490 - - PF01344.15.ls: domain 4 of 6, from 590 to 635: score 64.6, E = 2.9e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs +gv++l+gk+Y +GG+dg+++l+s e+YDp tn+W ++++m KIAA1490 590 ARSTVGVAALNGKLYSVGGRDGsSCLSSMEYYDPHTNKWNMCAPMC 635 -* KIAA1490 - - PF07646.5.fs: domain 3 of 5, from 590 to 635: score 26.9, E = 1.9e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ + ++ ++gkly+vGG+ +g++ +s++ ++dp tn+W KIAA1490 590 ARSTVGVAALNGKLYSVGGR--------DGSSCLSSMEYYDPHTNKW 628 eklpalp<-* +++++ KIAA1490 629 NMCAPMC 635 PF01344.15.fs: domain 5 of 6, from 637 to 688: score 59.6, E = 4.2e-16 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk +R g+gv+++dg +Y++GG+d + +++ ++ l+ ve+YDp+t+tWt+ KIAA1490 637 RRGGVGVATCDGFLYAVGGHDApasnhcsRLLDYVERYDPKTDTWTM 683 lpsmp<-* +++++ KIAA1490 684 VAPLS 688 PF07646.5.fs: domain 4 of 5, from 637 to 688: score 23.3, E = 1.8e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ +++++g ly vGG+ +++ +++ +++ + ++dp+t +W KIAA1490 637 RRGGVGVATCDGFLYAVGGH--DAPASNHCSRLLDYVERYDPKTDTW 681 eklpalp<-* + +++l KIAA1490 682 TMVAPLS 688 PF01344.15.ls: domain 5 of 6, from 637 to 688: score 61.6, E = 2.4e-15 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk +R g+gv+++dg +Y++GG+d + +++ ++ l+ ve+YDp+t+tWt+ KIAA1490 637 RRGGVGVATCDGFLYAVGGHDApasnhcsRLLDYVERYDPKTDTWTM 683 lpsmp<-* +++++ KIAA1490 684 VAPLS 688 PF07646.5.ls: domain 4 of 5, from 637 to 688: score 25.2, E = 0.00021 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ +++++g ly vGG+ +++ +++ +++ + ++dp+t +W KIAA1490 637 RRGGVGVATCDGFLYAVGGH--DAPASNHCSRLLDYVERYDPKTDTW 681 eklpalp<-* + +++l KIAA1490 682 TMVAPLS 688 PF07646.5.fs: domain 5 of 5, from 690 to 735: score 32.9, E = 4.5e-08 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr + ++++g++ly vGG+ +g +++++ +dp+tn+W KIAA1490 690 PRDAVGVCLLGDRLYAVGGY--------DGQTYLNTMESYDPQTNEW 728 eklpalp<-* + +++l KIAA1490 729 TQMASLN 735 PF01344.15.fs: domain 6 of 6, from 690 to 735: score 64.3, E = 1.9e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR +gv+ l++++Y++GGydg+++ln+ e+YDp tn+Wt+++s++ KIAA1490 690 PRDAVGVCLLGDRLYAVGGYDGqTYLNTMESYDPQTNEWTQMASLN 735 -* KIAA1490 - - PF01344.15.ls: domain 6 of 6, from 690 to 735: score 66.3, E = 9e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR +gv+ l++++Y++GGydg+++ln+ e+YDp tn+Wt+++s++ KIAA1490 690 PRDAVGVCLLGDRLYAVGGYDGqTYLNTMESYDPQTNEWTQMASLN 735 -* KIAA1490 - - PF07646.5.ls: domain 5 of 5, from 690 to 735: score 34.7, E = 2.9e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr + ++++g++ly vGG+ +g +++++ +dp+tn+W KIAA1490 690 PRDAVGVCLLGDRLYAVGGY--------DGQTYLNTMESYDPQTNEW 728 eklpalp<-* + +++l KIAA1490 729 TQMASLN 735 //