hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04205582/chunk_1/iprscan-20080502-04205582.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1490
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 369.2   2.6e-106   6
SM00225                                                 110.4      2e-28   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1     213   310 ..     1   114 []   110.4    2e-28
SM00612      1/6     461   507 ..     1    55 []    48.6  7.9e-10
SM00612      2/6     508   554 ..     1    55 []    68.3  9.3e-16
SM00612      3/6     555   601 ..     1    55 []    69.7  3.5e-16
SM00612      4/6     602   648 ..     1    55 []    65.8  5.5e-15
SM00612      5/6     649   701 ..     1    55 []    46.8  2.9e-09
SM00612      6/6     702   748 ..     1    55 []    69.9  3.2e-16

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 213 to 310: score 110.4, E = 2e-28
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+l+vg+         +k++a  H++vL++    S+yF a+f+s+
    KIAA1490   213    CDVILIVGN---------RKIPA--HRLVLSSV---SDYFAAMFTSd 245  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     + ++++i +++      ++p a+  l++f Yt+ l+l+e+   ++e l
    KIAA1490   246 vceakqeeIKMEG------IDPNALWDLVQFAYTgCLELKED---TIENL 286  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L++A +l    q+p++ve+C+ fl k l   
    KIAA1490   287 LAAACLL----QLPqVVEVCCHFLMKLL    310  

SM00612: domain 1 of 6, from 461 to 507: score 48.6, E = 7.9e-10
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       +Y+vGG+d+        +    ++E+YD++tn W +   M+ +R  
    KIAA1490   461    TLYAVGGMDN--------NKGATTIEKYDLRTNLWIQAGMMNGRRLQ 499  

                   agvaving<-*
                   +gvavi++   
    KIAA1490   500 FGVAVIDD    507  

SM00612: domain 2 of 6, from 508 to 554: score 68.3, E = 9.3e-16
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k++v+GG+dg          +l++vE+Y+p+t++W+++p+M+t R g
    KIAA1490   508    KLFVIGGRDGL--------KTLNTVECYNPKTKTWTVLPPMSTHRHG 546  

                   agvaving<-*
                    gv+v++g   
    KIAA1490   547 LGVTVLEG    554  

SM00612: domain 3 of 6, from 555 to 601: score 69.7, E = 3.5e-16
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iY+vGG+dg        +++l++vE++Dp +++W+ v+sM+ +Rs 
    KIAA1490   555    PIYAVGGHDG--------WSYLNTVERWDPQSQQWTFVASMSIARST 593  

                   agvaving<-*
                   +gva++ng   
    KIAA1490   594 VGVAALNG    601  

SM00612: domain 4 of 6, from 602 to 648: score 65.8, E = 5.5e-15
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+Y vGG+dg        +++l+s E+YDp+tnkW ++++M  +R g
    KIAA1490   602    KLYSVGGRDG--------SSCLSSMEYYDPHTNKWNMCAPMCKRRGG 640  

                   agvaving<-*
                   +gva+++g   
    KIAA1490   641 VGVATCDG    648  

SM00612: domain 5 of 6, from 649 to 701: score 46.8, E = 2.9e-09
                   *->kiYvvGGfdg...ttrclpgegqrlksvEvYDpetnkWrpvpsMptp
                       +Y+vGG+d + ++++     ++ l+ vE+YDp+t++W++v+++++p
    KIAA1490   649    FLYAVGGHDApasNHC-----SRLLDYVERYDPKTDTWTMVAPLSMP 690  

                   Rsgagvaving<-*
                   R  +gv+ +++   
    KIAA1490   691 RDAVGVCLLGD    701  

SM00612: domain 6 of 6, from 702 to 748: score 69.9, E = 3.2e-16
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++Y+vGG+dg        +++l++ E YDp tn+W++++s++ +R+g
    KIAA1490   702    RLYAVGGYDG--------QTYLNTMESYDPQTNEWTQMASLNIGRAG 740  

                   agvaving<-*
                   a+v+vi+    
    KIAA1490   741 ACVVVIKQ    748  

//