hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04254559/chunk_1/iprscan-20080502-04254559.nocrc
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Query sequence: KIAA1493
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03607.8.fs Doublecortin                                    40.9    4.2e-11   1
PF03607.8.ls Doublecortin                                    42.6    1.3e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03607.8.ls   1/1     125   174 ..     1    69 []    42.6  1.3e-09
PF03607.8.fs   1/1     130   174 ..    12    69 .]    40.9  4.2e-11

Alignments of top-scoring domains:
PF03607.8.ls: domain 1 of 1, from 125 to 174: score 42.6, E = 1.3e-09
                   *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr
                      +v  +++      +LL++    +Te+++l ++   ++k+YT+DG   
    KIAA1493   125    IVAGTFP------MLLTE----CTEQLGLARA---ASKVYTKDG--- 155  

                   islldeledggvYVAsgseaFk<-*
                    +++++l+d+  +  ++s  F    
    KIAA1493   156 -TPIFTLRDLVLWALDES--FL    174  

PF03607.8.fs: domain 1 of 1, from 130 to 174: score 40.9, E = 4.2e-11
                   *->fdaLLedLtkvvTekiklptGaaAvrklYTtDGshrislldeledgg
                      f++LL++    +Te+++l ++   ++k+YT+DG    +++++l+d+ 
    KIAA1493   130    FPMLLTE----CTEQLGLARA---ASKVYTKDG----TPIFTLRDLV 165  

                   vYVAsgseaFk<-*
                    +  ++s  F    
    KIAA1493   166 LWALDES--FL    174  

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