hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04304566/chunk_1/iprscan-20080502-04304566.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1496 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 236.3 2.5e-66 5 SM00408 201.2 9.5e-56 5 SM00060 139.7 3e-37 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/5 21 109 .. 1 58 [] 37.1 2.3e-06 SM00408 1/5 27 95 .. 1 56 [] 6.9 1.1 SM00409 2/5 126 207 .. 1 58 [] 47.2 2.2e-09 SM00408 2/5 132 196 .. 1 56 [] 63.1 3.6e-14 SM00409 3/5 216 296 .. 1 58 [] 42.6 5.3e-08 SM00408 3/5 222 285 .. 1 56 [] 59.3 5e-13 SM00409 4/5 308 389 .. 1 58 [] 55.3 7.8e-12 SM00408 4/5 314 378 .. 1 56 [] 47.9 1.3e-09 SM00409 5/5 398 487 .. 1 58 [] 54.1 1.8e-11 SM00408 5/5 404 476 .. 1 56 [] 24.0 0.017 SM00060 1/4 490 576 .. 1 69 [] 62.9 4.2e-14 SM00060 2/4 593 679 .. 1 69 [] 22.1 0.075 SM00060 3/4 695 780 .. 1 69 [] 32.3 6.5e-05 SM00060 4/4 795 875 .. 1 69 [] 22.4 0.063 Alignments of top-scoring domains: SM00409: domain 1 of 5, from 21 to 109: score 37.1, E = 2.3e-06 *->pp.vtvkeGesvtLtC.as......titWy................. ++v+v+eG+ v+L C+ +++++ ++ W + ++ ++++ + KIAA1496 21 RStVSVREGQGVVLLCgPPphsgelSYAWIfneypsfveedsrrfvs 67 .....LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* + +++L I++v+p+D G+YtC++t+ ++ + + +t L + KIAA1496 68 qetghLYIsKVEPSDV---GNYTCVVTsmvtNARVLG-SPTPLVLR 109 SM00408: domain 1 of 5, from 27 to 95: score 6.9, E = 1.1 *->leGqsVtLtCpasgdpvp.....nItWlk..gkplp..........s +eGq V+L C+ p p++++ + W++++ + ++++++ ++ KIAA1496 27 REGQGVVLLCG----PPPhsgelSYAWIFneYPSFVeedsrrfvsqE 69 gstLtiknvsleDsGlYtCvArNsvg<-* ++L i+ v+++D G+YtCv+++ v KIAA1496 70 TGHLYISKVEPSDVGNYTCVVTSMVT 95 SM00409: domain 2 of 5, from 126 to 207: score 47.2, E = 2.2e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ + G++v+L+C a +++ ++i W+++++ + +++ + ++ ++ KIAA1496 126 PEtLPAAKGSTVKLECfALgnpipQINWRrsdglpfsskiklrkfsg 172 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+I+n + eD+ G Y C a+++ g+ + +Lt + KIAA1496 173 vLEIpNFQQEDA---GSYECIAEnsRGKNVA--RGRLTYY 207 SM00408: domain 2 of 5, from 132 to 196: score 63.1, E = 3.6e-14 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.......sgstLtikn G +V L+C+a g+p p+I W++++g p +++ + ++ ++ L+i n KIAA1496 132 AKGSTVKLECFALGNPIPQINWRRsdGLPFSskiklrkFSGVLEIPN 178 vsleDsGlYtCvArNsvg<-* ++ eD+G Y+C+A+Ns g KIAA1496 179 FQQEDAGSYECIAENSRG 196 SM00409: domain 3 of 5, from 216 to 296: score 42.6, E = 5.3e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v+ + +s+ +C+as++++++++W++++ +++ ++ KIAA1496 216 IKdVEIAVEDSLYWECrASgkpkpSYRWLkngaalvleertqienga 262 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* LtI+n+++ Ds G ++C a++++g ++s +++L+V KIAA1496 263 LTIsNLSVTDS---GMFQCIAEnkHGLVYS--SAELKVV 296 SM00408: domain 3 of 5, from 222 to 285: score 59.3, E = 5e-13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv +s+ ++C+asg+p p+ +Wlk+g l +++++ ++ Lti+n KIAA1496 222 AVEDSLYWECRASGKPKPSYRWLKnGAALVleertqiENGALTISNL 268 sleDsGlYtCvArNsvg<-* s+ DsG+ +C+A+N++g KIAA1496 269 SVTDSGMFQCIAENKHG 285 SM00409: domain 4 of 5, from 308 to 389: score 55.3, E = 7.8e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. + v v++G+ v+L C+ ++ +W++++ + + + + + +++ KIAA1496 308 KKlVQVQVGSLVSLDCkPRaspraLSSWKkgdvsvqeherisllndg 354 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L I nvt++D+ GtYtC+a++ g+a + +t+L V+ KIAA1496 355 gLKIaNVTKADA---GTYTCMAEnqFGKANG--TTHLVVT 389 SM00408: domain 4 of 5, from 314 to 378: score 47.9, E = 1.3e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn + G V+L C+ +++p + +W+k++ +++++++ + +++ L+i n KIAA1496 314 QVGSLVSLDCKPRASPRALSSWKKgDVSVQeherisllNDGGLKIAN 360 vsleDsGlYtCvArNsvg<-* v+++D+G+YtC A+N g KIAA1496 361 VTKADAGTYTCMAENQFG 378 SM00409: domain 5 of 5, from 398 to 487: score 54.1, E = 1.8e-11 *->pp.vtvkeGesvtLtC.as.......titWy................ p+++ v++Gesv L+C++++++ + +tWy ++ + ++++++ KIAA1496 398 PSnMDVSVGESVILPCqVQhdplldiIFTWYfngaladfkkdgshfe 444 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- + +++++++L I+n+++ +s G Y+C+++++ s+ss + L+V+ KIAA1496 445 kvggsssgdLMIrNIQLKHS---GKYVCMVQtgVDSVSS--AADLIVR 487 * KIAA1496 - - SM00408: domain 5 of 5, from 404 to 476: score 24.0, E = 0.017 *->leGqsVtLtCpasgdp..vpnItWlkgkplp...............s G+sV+L+C + dp + +tW+++ l++ ++++++ ++ +++s KIAA1496 404 SVGESVILPCQVQHDPllDIIFTWYFNGALAdfkkdgshfekvggsS 450 gstLtiknvsleDsGlYtCvArNsvg<-* ++ L i+n++l +sG+Y+C ++ v KIAA1496 451 SGDLMIRNIQLKHSGKYVCMVQTGVD 476 SM00060: domain 1 of 4, from 490 to 576: score 62.9, E = 4.2e-14 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... PgpP+n ++v ++t+t +++lsW++ +++++++++Y+ + KIAA1496 490 PGPPEN---VKVDEITDT------TAQLSWKEGkdnhspVISYSiqa 527 ........................ytltgLkPgaepwteYefrVrAvngn +++ +++++++++++++ ++++ ++t+ L P+ eYefrV+A n+ KIAA1496 528 rtpfsvgwqtvttvpevidgkthtATVVELNPW----VEYEFRVVASNK- 572 daGeg<-* G g KIAA1496 573 -IGGG 576 SM00060: domain 2 of 4, from 593 to 679: score 22.1, E = 0.075 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv pPs + +++ ++++W+p +++ ++++ +++v KIAA1496 593 EVPPSE---VNGGGGSRS------ELVITWDPVpeelqngegfgyVV 630 gYr.....................ytltgLkPgaepwteYefrVrAvngn +r+ +++++ +++++++++++ +++ + +P+ + Ye++V ++n KIAA1496 631 AFRplgvttwiqtvvtspdtpryvFRNESIVPY----SPYEVKVGVYNN- 675 daGeg<-* +Geg KIAA1496 676 -KGEG 679 SM00060: domain 3 of 4, from 695 to 780: score 32.3, E = 6.5e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP.......ivgYr. +Ps +++ + +s+ +++sW++ P + ++++ +gY++ KIAA1496 695 TVAPSQ---VSANSLSSS------EIEVSWNtIPwklsnghLLGYEv 732 .......................ytltgLkPgaepwteYefrVrAvngnd + ++++++++++++ ++ +++++++l+gLk + Y VrA+n+ KIAA1496 733 rywngggkeessskmkvagnetsARLRGLKSN----LAYYTAVRAYNS-- 776 aGeg<-* aG g KIAA1496 777 AGAG 780 SM00060: domain 4 of 4, from 795 to 875: score 22.4, E = 0.063 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P+ P++ +v + t+t v l We + +++++++gY++ KIAA1496 795 PSQPPG---NVVWNATDT------KVLLNWEQVkameneseVTGYKv 832 .....................ytltgLkPgaepwteYefrVrAvngndaG ++++++++++ ++++++ + +l+ k++ Y + V+A ++ +G KIAA1496 833 fyrtssqnnvqvlntnktsaeLVLP-IKED------YIIEVKATTD--GG 873 eg<-* g KIAA1496 874 DG 875 //