hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04322484/chunk_1/iprscan-20080502-04322484.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1497 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 119.4 9.8e-33 14 PF00560.23.fs Leucine Rich Repeat 94.4 3.2e-25 13 PF07679.6.fs Immunoglobulin I-set domain 69.8 9.2e-20 1 PF07679.6.ls Immunoglobulin I-set domain 69.6 9e-18 1 PF00047.15.fs Immunoglobulin domain 32.8 3e-08 1 PF00047.15.ls Immunoglobulin domain 34.7 2.9e-07 1 PF07686.7.fs Immunoglobulin V-set domain 22.0 9.8e-06 1 PF01463.14.fs Leucine rich repeat C-terminal domain 17.4 0.00017 1 PF07686.7.ls Immunoglobulin V-set domain 18.5 0.00067 1 PF00041.11.ls Fibronectin type III domain 8.2 0.022 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.fs 2/13 110 132 .. 1 24 [] 13.5 0.012 PF00560.23.ls 3/14 110 132 .. 1 24 [] 15.3 0.2 PF00560.23.ls 4/14 134 156 .. 1 24 [] 10.3 3.1 PF00560.23.ls 5/14 158 180 .. 1 24 [] 19.0 0.016 PF00560.23.fs 4/13 158 180 .. 1 24 [] 17.1 0.0012 PF00560.23.fs 7/13 230 252 .. 1 24 [] 10.9 0.061 PF00560.23.ls 8/14 230 252 .. 1 24 [] 12.8 1.1 PF00560.23.ls 9/14 254 276 .. 1 24 [] 9.7 4 PF00560.23.ls 10/14 278 300 .. 1 24 [] 14.3 0.41 PF00560.23.fs 9/13 278 300 .. 1 24 [] 12.4 0.024 PF01463.14.fs 1/1 410 437 .. 1 26 [] 17.4 0.00017 PF07679.6.ls 1/1 438 530 .. 1 96 [] 69.6 9e-18 PF07686.7.ls 1/1 439 533 .. 1 141 [] 18.5 0.00067 PF07679.6.fs 1/1 446 530 .. 7 96 .] 69.8 9.2e-20 PF00047.15.ls 1/1 454 515 .. 1 65 [] 34.7 2.9e-07 PF00047.15.fs 1/1 454 515 .. 1 65 [] 32.8 3e-08 PF07686.7.fs 1/1 471 533 .. 75 141 .] 22.0 9.8e-06 PF00041.11.ls 1/1 537 619 .. 1 84 [] 8.2 0.022 Alignments of top-scoring domains: PF00560.23.fs: domain 2 of 13, from 110 to 132: score 13.5, E = 0.012 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+eLd+s N ++t ++ + +l nl KIAA1497 110 NLTELDFSQ-N-NFT-NIKEVgLaNL 132 PF00560.23.ls: domain 3 of 14, from 110 to 132: score 15.3, E = 0.2 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+eLd+s N ++t ++ + +l nl KIAA1497 110 NLTELDFSQ-N-NFT-NIKEVgLaNL 132 PF00560.23.ls: domain 4 of 14, from 134 to 156: score 10.3, E = 3.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L+ N ++t ++ + l++l KIAA1497 134 QLTTLHLEE-N-QIT-EMTDYcLqDL 156 PF00560.23.ls: domain 5 of 14, from 158 to 180: score 19.0, E = 0.016 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+eL++++ N +++ +++++++ +l KIAA1497 158 NLQELYINH-N-QIS-TISAHaFaGL 180 PF00560.23.fs: domain 4 of 13, from 158 to 180: score 17.1, E = 0.0012 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+eL++++ N +++ +++++++ +l KIAA1497 158 NLQELYINH-N-QIS-TISAHaFaGL 180 PF00560.23.fs: domain 7 of 13, from 230 to 252: score 10.9, E = 0.061 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L L g lt ++p ++l +l KIAA1497 230 NLRSLVLAG-M-YLT-DIPGNaLvGL 252 PF00560.23.ls: domain 8 of 14, from 230 to 252: score 12.8, E = 1.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L L g lt ++p ++l +l KIAA1497 230 NLRSLVLAG-M-YLT-DIPGNaLvGL 252 PF00560.23.ls: domain 9 of 14, from 254 to 276: score 9.7, E = 4 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+L++++ N +l+ ++p +l++ KIAA1497 254 SLESLSFYD-N-KLV-KVPQLaLqKV 276 PF00560.23.ls: domain 10 of 14, from 278 to 300: score 14.3, E = 0.41 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+ LdL+ N ++ ++++++++n+ KIAA1497 278 NLKFLDLNK-N-PIH-KIQEGdFkNM 300 PF00560.23.fs: domain 9 of 13, from 278 to 300: score 12.4, E = 0.024 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+ LdL+ N ++ ++++++++n+ KIAA1497 278 NLKFLDLNK-N-PIH-KIQEGdFkNM 300 PF01463.14.fs: domain 1 of 1, from 410 to 437: score 17.4, E = 0.00017 *->dlrCasPeslrGqplldlpp..sdfsCp<-* ++ Ca+P++++G+++++++ ++s+ +C KIAA1497 410 SMFCAMPPEYKGHQVKEVLIqdSSEQCL 437 PF07679.6.ls: domain 1 of 1, from 438 to 530: score 69.6, E = 9e-18 *->PkF..tqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssv P ++++ p +++V +G +++++C++ +PeP++ W G ++++ KIAA1497 438 PMIshDSFPNRLNVDIGTTVFLDCRAMAEPEPEIYWVTPiGNKITV- 483 llpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeL + sd++k + +g tL+Isn+q++DsG YtCvA+N G ++ a+ KIAA1497 484 ETLSDKYKLSSEG-----TLEISNIQIEDSGRYTCVAQNVQGADTRVATI 528 tV<-* +V KIAA1497 529 KV 530 PF07686.7.ls: domain 1 of 1, from 439 to 533: score 18.5, E = 0.00067 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +++ p + v G++v L C + KIAA1497 439 MISHDS-FPN------------RLNVDIGTTVFLDCRAM-------- 464 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls +++ +i+ ++t gn+ + e +++++ ls KIAA1497 465 ---------------AEPEPEIY------WVTPIGNKITVETLSDKYKLS 493 gnpskgdfsLtIsnlqlsDsGtYyCavsns.nelvfgggtrLtVl<-* + ++ L Isn+q +DsG Y+C+ n ++ ++ + +++ + KIAA1497 494 SEGT-----LEISNIQIEDSGRYTCVAQNVqGADTRVATIKVNGT 533 PF07679.6.fs: domain 1 of 1, from 446 to 530: score 69.8, E = 9.2e-20 *->pkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvllpsdrfk p +++V +G +++++C++ +PeP++ W G ++++ + sd++k KIAA1497 446 PNRLNVDIGTTVFLDCRAMAEPEPEIYWVTPiGNKITV-ETLSDKYK 491 vtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* + +g tL+Isn+q++DsG YtCvA+N G ++ a+ +V KIAA1497 492 LSSEG-----TLEISNIQIEDSGRYTCVAQNVQGADTRVATIKV 530 PF00047.15.ls: domain 1 of 1, from 454 to 515: score 34.7, E = 2.9e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt G +v L C++ + p+++++W ++++ v++ s+ ++ +s + KIAA1497 454 GTTVFLDCRAM--AEPEPEIYWVTPIGnKITVETLSDKYKLSSEGT- 497 sLtitnvtpeDggtYtCvv<-* L i+n++ eD+g YtCv+ KIAA1497 498 -LEISNIQIEDSGRYTCVA 515 PF00047.15.fs: domain 1 of 1, from 454 to 515: score 32.8, E = 3e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt G +v L C++ + p+++++W ++++ v++ s+ ++ +s + KIAA1497 454 GTTVFLDCRAM--AEPEPEIYWVTPIGnKITVETLSDKYKLSSEGT- 497 sLtitnvtpeDggtYtCvv<-* L i+n++ eD+g YtCv+ KIAA1497 498 -LEISNIQIEDSGRYTCVA 515 PF07686.7.fs: domain 1 of 1, from 471 to 533: score 22.0, E = 9.8e-06 *->syystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYy +y++t gn+ + e +++++ ls+ ++ L Isn+q +DsG Y+ KIAA1497 471 IYWVTPIGNKITVETLSDKYKLSSEGT-----LEISNIQIEDSGRYT 512 Cavsns.nelvfgggtrLtVl<-* C+ n ++ ++ + +++ + KIAA1497 513 CVAQNVqGADTRVATIKVNGT 533 PF00041.11.ls: domain 1 of 1, from 537 to 619: score 8.2, E = 0.022 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. ++ + v+ + s s+ +sW+ + + ++++ +++ +++ + KIAA1497 537 GTQVLKIYVKQTESHSILVSWKVN---SNVMTSNLKW-SSA-TMKid 578 ....wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +++ + + +vp + ++y+lt L+P t+Y+v+++ n + + + KIAA1497 579 nphiTYTARVPVDVHEYNLTHLQPSTDYEVCLTVSNIH--QQT 619 //