hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04322484/chunk_1/iprscan-20080502-04322484.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1497 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00369 135.9 4.2e-36 9 SM00408 69.6 3.9e-16 1 SM00409 49.3 4.9e-10 1 SM00082 46.3 4.2e-09 1 SM00365 39.2 5.4e-07 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00365 1/4 108 129 .. 1 22 [] 7.2 1.1e+02 SM00369 1/9 108 131 .. 1 24 [] 12.5 12 SM00369 2/9 132 155 .. 1 24 [] 21.1 0.15 SM00369 3/9 156 179 .. 1 24 [] 31.2 0.00015 SM00365 2/4 156 182 .. 1 22 [] 13.0 21 SM00369 4/9 180 203 .. 1 24 [] 20.7 0.2 SM00369 5/9 228 251 .. 1 24 [] 8.2 41 SM00369 6/9 252 275 .. 1 24 [] 13.2 10 SM00365 3/4 252 273 .. 1 22 [] 8.3 79 SM00365 4/4 276 297 .. 1 22 [] 10.9 38 SM00369 7/9 276 299 .. 1 24 [] 16.8 3.1 SM00369 8/9 325 349 .. 1 24 [] 3.2 1.7e+02 SM00369 9/9 350 373 .. 1 24 [] 9.0 33 SM00082 1/1 385 437 .. 1 55 [] 46.3 4.2e-09 SM00409 1/1 446 531 .. 1 58 [] 49.3 4.9e-10 SM00408 1/1 452 520 .. 1 56 [] 69.6 3.9e-16 Alignments of top-scoring domains: SM00365: domain 1 of 4, from 108 to 129: score 7.2, E = 1.1e+02 *->LtnLeeLdLsqNkIkkiENLde<-* L nL+eLd+sqN + i + KIAA1497 108 LFNLTELDFSQNNFTNIKEVGL 129 SM00369: domain 1 of 9, from 108 to 131: score 12.5, E = 12 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+eLd s N++t + + +++ KIAA1497 108 LFNLTELDFSQNNFTNIKEVGLAN 131 SM00369: domain 2 of 9, from 132 to 155: score 21.1, E = 0.15 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L++L+L+ Nq+t+ + +q+ KIAA1497 132 LTQLTTLHLEENQITEMTDYCLQD 155 SM00369: domain 3 of 9, from 156 to 179: score 31.2, E = 0.00015 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL+eL+ ++Nq++++ + aF+g KIAA1497 156 LSNLQELYINHNQISTISAHAFAG 179 SM00365: domain 2 of 4, from 156 to 182: score 13.0, E = 21 *->LtnLeeLdLsqNkI.....kkiENLde<-* L+nL+eL++++N+I++ + + + +L + KIAA1497 156 LSNLQELYINHNQIstisaHAFAGLKN 182 SM00369: domain 4 of 9, from 180 to 203: score 20.7, E = 0.2 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL +L+L++N+L+ + ++ F++ KIAA1497 180 LKNLLRLHLNSNKLKVIDSRWFDS 203 SM00369: domain 5 of 9, from 228 to 251: score 8.2, E = 41 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nLr+L L + Lt +P +a+ g KIAA1497 228 LANLRSLVLAGMYLTDIPGNALVG 251 SM00369: domain 6 of 9, from 252 to 275: score 13.2, E = 10 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L++L+ +N+L +P+ a+q KIAA1497 252 LDSLESLSFYDNKLVKVPQLALQK 275 SM00365: domain 3 of 4, from 252 to 273: score 8.3, E = 79 *->LtnLeeLdLsqNkIkkiENLde<-* L+ Le+L++++Nk+ k+ L KIAA1497 252 LDSLESLSFYDNKLVKVPQLAL 273 SM00365: domain 4 of 4, from 276 to 297: score 10.9, E = 38 *->LtnLeeLdLsqNkIkkiENLde<-* nL+ LdL++N I+ki+ d KIAA1497 276 VPNLKFLDLNKNPIHKIQEGDF 297 SM00369: domain 7 of 9, from 276 to 299: score 16.8, E = 3.1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* pnL+ LdL+ N + + +g F + KIAA1497 276 VPNLKFLDLNKNPIHKIQEGDFKN 299 SM00369: domain 8 of 9, from 325 to 349: score 3.2, E = 1.7e+02 *->LpnLreLdLsnN.qLtsLPpgaFqg<-* Lp+L++L nN++L+ +++ aF++ KIAA1497 325 LPELTKLEATNNpKLSYIHRLAFRS 349 SM00369: domain 9 of 9, from 350 to 373: score 9.0, E = 33 *->LpnLreLdLsnNqLtsLPpgaFqg<-* p+L++L L+nN+L ++ + + ++ KIAA1497 350 VPALESLMLNNNALNAIYQKTVES 373 SM00082: domain 1 of 1, from 385 to 437: score 46.3, E = 4.2e-09 *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll NP++CDC ++w+ ++ + +++++p s+ Ca+P++++G ++ ++ KIAA1497 385 NPLRCDCVIHWINSNKTN---IRFMEPL-SMFCAMPPEYKGHQVKEV 427 lp..sefsCp<-* l ++s+ +C KIAA1497 428 LIqdSSEQCL 437 SM00409: domain 1 of 1, from 446 to 531: score 49.3, E = 4.9e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. p ++ v G +v L C+a + ++i+W ++ +++ + + +++ + KIAA1497 446 PNrLNVDIGTTVFLDCrAMaepepEIYWVtpignkitvetlsdkykl 492 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ ++L+I+n++ eDs G YtC+a++ g ++ +t++V KIAA1497 493 ssegtLEIsNIQIEDS---GRYTCVAQnvQGADTR--VATIKVN 531 SM00408: domain 1 of 1, from 452 to 520: score 69.6, E = 3.9e-16 *->leGqsVtLtCpasgdpvpnItWlk..gkplp...........sgstL +G++V L C+a + p+p+I W+ + g ++ ++ +++ + +s++tL KIAA1497 452 DIGTTVFLDCRAMAEPEPEIYWVTpiGNKITvetlsdkyklsSEGTL 498 tiknvsleDsGlYtCvArNsvg<-* +i+n++ eDsG+YtCvA+N g KIAA1497 499 EISNIQIEDSGRYTCVAQNVQG 520 //